Source: relion Version: 1.4+dfsg-4 Severity: serious Justification: FTBFS on amd64 Tags: buster sid Usertags: ftbfs-20200222 ftbfs-buster
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > /bin/bash ./libtool --tag=CXX --mode=compile mpicxx.openmpi > -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -c -o src/autopicker_mpi.lo src/autopicker_mpi.cpp > libtool: compile: mpicxx.openmpi -DHAVE_CONFIG_H -I. -Wdate-time > -D_FORTIFY_SOURCE=2 -fpic -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -c > src/autopicker_mpi.cpp -fPIC -DPIC -o src/.libs/autopicker_mpi.o > src/mpi.cpp: In constructor ‘MpiNode::MpiNode(int&, char**)’: > src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’ declared with > attribute error: MPI_Errhandler_set was removed in MPI-3.0. Use > MPI_Comm_set_errhandler instead. > 56 | MPI_Errhandler_set(MPI_COMM_WORLD, MPI_ERRORS_RETURN); > | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > make[3]: *** [Makefile:1305: src/mpi.lo] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/02/22/relion_1.4+dfsg-4_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.