Source: libbpp-popgen Version: 2.4.1-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200222 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_install > d-shlibmove --commit \ > --multiarch \ > --devunversioned \ > --exclude-la \ > --movedev debian/tmp/usr/include/* usr/include \ > --movedev debian/tmp/usr/lib/*/cmake > usr/lib/x86_64-linux-gnu \ > debian/tmp/usr/lib/*/*.so > Library package automatic movement utility > --> libbpp-core-dev package exists. > --> libbpp-seq-dev package exists. > set -e > install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu > install -d -m 755 debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu > mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.a > debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu > mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so > debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu > mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8 > debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu > mv > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 > debian/libbpp-popgen8/usr/lib/x86_64-linux-gnu > PKGDEV=libbpp-popgen-dev > PKGSHL=libbpp-popgen8 > install -d -m 755 debian/libbpp-popgen-dev/usr/include > mv debian/tmp/usr/include/Bpp debian/libbpp-popgen-dev/usr/include > install -d -m 755 debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu > mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake > debian/libbpp-popgen-dev/usr/lib/x86_64-linux-gnu > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_installdocs > dh_installchangelogs > dh_perl > dh_link > dh_strip_nondeterminism > dh_compress > dh_fixperms > dh_missing > dh_dwz > dh_strip > dh_makeshlibs > dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols > file: see diff output below > dpkg-gensymbols: warning: debian/libbpp-popgen8/DEBIAN/symbols doesn't match > completely debian/libbpp-popgen8.symbols.amd64 > --- debian/libbpp-popgen8.symbols.amd64 (libbpp-popgen8_2.4.1-2_amd64) > +++ dpkg-gensymbolstUa40O 2020-02-23 02:45:26.493958486 +0000 > @@ -910,8 +910,8 @@ > > _ZNSt5dequeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base > 2.4.1 > > _ZNSt6vectorIN3bpp19GeneMapperCsvExport6AlleleESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base > 2.4.1 > > _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base > 2.4.1 > - _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED1Ev@Base 2.4.1 > - _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED2Ev@Base 2.4.1 > +#MISSING: 2.4.1-2# _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED1Ev@Base 2.4.1 > +#MISSING: 2.4.1-2# _ZNSt6vectorIN3bpp9LocusInfoESaIS1_EED2Ev@Base 2.4.1 > > _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base > 2.4.1 > > _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm@Base > 2.4.1 > > _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base > 2.4.1 > dh_makeshlibs: error: failing due to earlier errors > make: *** [debian/rules:8: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2020/02/22/libbpp-popgen_2.4.1-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.