Hi again, > I need to inspect the spades issue (may be my local environment is not > totally clean regarding spades!) but it seems that changes in fermi-lite > between 0.1-5 and latest fermi-lite are responsible for most of the test > suite errors. There might be a chance to "bisect" fermi-lite package > uploads (= checking 0.1-7 and depending from the result 0.1-6 or 0.1-8) > to find out what actual change might have caused the failures. But > may be Michael or Sascha (both in CC have a more direct idea about the > changes that might affect the test.
I've did a test build with fermi-lite 0.1-7[1]. I can confirm that ariba builds nicely against this version. *All* build-time tests are running. I guess the spades test did not fail since spades is not in Build-Depends (hmmm, is it a bug that spades is neither in Build-Depends nor Depends or Recommends? Its not in the documentation but there are some references inside the code!) However, despite the build-time tests are running there are issues in autopkgtest. While debci logs also report an issue in unstable[2] this is rather connected to Python 3.8 transition. In the autopkgtest log of my pbuilder chroot I get: ... Python packages OK: True Everything looks OK: False Some dependencies not satisfied. Cannot continue. Running ARIBA on test data... ------------------------------------------------------------------------------- |=============================================================================| | Preparing input data | |=============================================================================| ------------------------------------------------------------------------------- Made output directory ./foo. Copying test data files into it: copied ref_seqs.fa copied metadata.tsv copied reads_1.fq copied reads_2.fq ------------------------------------------------------------------------------- |=============================================================================| | Try running ariba prepareref | |=============================================================================| ------------------------------------------------------------------------------- Running ariba prepareref with: /usr/bin/ariba prepareref --verbose -f ref_seqs.fa -m metadata.tsv --threads 1 PREPAREREF Something went wrong. See above for error message(s). Return code was 1 ... No idea what this might mean yet. If there will be no further ideas I'll do a build check with fermi-lite 0.1-8 tomorrow. Kind regards Andreas. [1] https://snapshot.debian.org/package/fermi-lite/0.1-7/ [2] https://ci.debian.net/packages/a/ariba/ -- http://fam-tille.de