Source: python-cobra Version: 0.14.2-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200402 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules build > dh build --with python3 --buildsystem=pybuild > dh_update_autotools_config -O--buildsystem=pybuild > dh_autoreconf -O--buildsystem=pybuild > dh_auto_configure -O--buildsystem=pybuild > I: pybuild base:217: python3.7 setup.py config > running config > I: pybuild base:217: python3.8 setup.py config > running config > dh_auto_build -O--buildsystem=pybuild > I: pybuild base:217: /usr/bin/python3.7 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra > copying cobra/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra > copying cobra/exceptions.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/array.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/solver.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > copying cobra/util/context.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/configuration.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/object.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/species.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/singleton.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/gene.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/dictlist.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/metabolite.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/reaction.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/model.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/formula.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > copying cobra/core/solution.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/geometric.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/room.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/loopless.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/deletion.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/gapfilling.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/phenotype_phase_plane.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/variability.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/sampling.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/parsimonious.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/summary.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/moma.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/reaction.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > copying cobra/test/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > copying cobra/test/test_manipulation.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > copying cobra/test/test_medium.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > copying cobra/test/conftest.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/validate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/modify.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/delete.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > copying cobra/manipulation/annotate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > copying cobra/medium/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > copying cobra/medium/annotations.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > copying cobra/medium/boundary_types.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > copying cobra/medium/minimal_medium.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/dict.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/sbml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/json.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/yaml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/mat.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > copying cobra/io/sbml3.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_sbml3.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_mat.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_sbml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_pickle.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/conftest.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_yaml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_json.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_io_order.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/iJO1366.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/invalid0.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc1.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_cobra.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/update_pickles.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/raven.mat -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/textbook.xml.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/textbook_fva.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.genes -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/textbook_pfba_fva.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/raven.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/invalid2.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/iJO1366.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/invalid1.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.media -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/textbook_solution.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini.mat -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini.yml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml.bz2 -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data > I: pybuild base:217: /usr/bin/python3 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra > copying cobra/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra > copying cobra/exceptions.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/array.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/util.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/solver.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > copying cobra/util/context.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/configuration.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/object.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/species.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/singleton.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/gene.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/dictlist.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/metabolite.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/reaction.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/model.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/formula.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > copying cobra/core/solution.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/geometric.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/room.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/loopless.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/deletion.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/gapfilling.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/phenotype_phase_plane.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/variability.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/sampling.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/parsimonious.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/summary.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/moma.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > copying cobra/flux_analysis/reaction.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > copying cobra/test/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > copying cobra/test/test_manipulation.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > copying cobra/test/test_medium.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > copying cobra/test/conftest.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/validate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/modify.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/delete.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > copying cobra/manipulation/annotate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > copying cobra/medium/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > copying cobra/medium/annotations.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > copying cobra/medium/boundary_types.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > copying cobra/medium/minimal_medium.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/dict.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/sbml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/json.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/yaml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/mat.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > copying cobra/io/sbml3.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_sbml3.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_mat.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_sbml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_pickle.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/conftest.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_yaml.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_json.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > copying cobra/test/test_io/test_io_order.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/iJO1366.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/invalid0.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc1.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_cobra.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/update_pickles.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/raven.mat -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/textbook.xml.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/textbook_fva.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.genes -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/textbook_pfba_fva.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/raven.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/invalid2.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/iJO1366.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/invalid1.xml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/salmonella.media -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/textbook_solution.pickle -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini.mat -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini.yml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini.json -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml.bz2 -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > copying cobra/test/data/mini_fbc2.xml.gz -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data > dh_auto_test -O--buildsystem=pybuild > I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; > python3.7 -m pytest > ============================= test session starts > ============================== > platform linux -- Python 3.7.7, pytest-4.6.9, py-1.8.1, pluggy-0.13.0 > benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False > min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 > warmup=False warmup_iterations=100000) > rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg > plugins: benchmark-3.2.2 > collected 0 items / 1 errors > > ==================================== ERRORS > ==================================== > ________________________ ERROR collecting test session > _________________________ > /usr/lib/python3/dist-packages/_pytest/config/__init__.py:440: in > _importconftest > return self._conftestpath2mod[conftestpath] > E KeyError: > local('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py') > > During handling of the above exception, another exception occurred: > /usr/lib/python3/dist-packages/_pytest/config/__init__.py:446: in > _importconftest > mod = conftestpath.pyimport() > /usr/lib/python3/dist-packages/py/_path/local.py:701: in pyimport > __import__(modname) > cobra/__init__.py:11: in <module> > from cobra.core import ( > cobra/core/__init__.py:5: in <module> > from cobra.core.configuration import Configuration > cobra/core/configuration.py:16: in <module> > from cobra.util.solver import interface_to_str, solvers > cobra/util/__init__.py:5: in <module> > from cobra.util.array import * > cobra/util/array.py:8: in <module> > import pandas as pd > /usr/lib/python3/dist-packages/pandas/__init__.py:182: in <module> > import pandas.testing > /usr/lib/python3/dist-packages/pandas/testing.py:7: in <module> > from pandas.util.testing import ( > /usr/lib/python3/dist-packages/pandas/util/testing.py:18: in <module> > from matplotlib.cbook import MatplotlibDeprecationWarning > E ModuleNotFoundError: No module named 'matplotlib' > > During handling of the above exception, another exception occurred: > /usr/lib/python3/dist-packages/py/_path/common.py:383: in visit > for x in Visitor(fil, rec, ignore, bf, sort).gen(self): > /usr/lib/python3/dist-packages/py/_path/common.py:435: in gen > for p in self.gen(subdir): > /usr/lib/python3/dist-packages/py/_path/common.py:424: in gen > dirs = self.optsort([p for p in entries > /usr/lib/python3/dist-packages/py/_path/common.py:425: in <listcomp> > if p.check(dir=1) and (rec is None or rec(p))]) > /usr/lib/python3/dist-packages/_pytest/main.py:667: in _recurse > ihook = self.gethookproxy(dirpath) > /usr/lib/python3/dist-packages/_pytest/main.py:482: in gethookproxy > my_conftestmodules = pm._getconftestmodules(fspath) > /usr/lib/python3/dist-packages/_pytest/config/__init__.py:424: in > _getconftestmodules > mod = self._importconftest(conftestpath.realpath()) > /usr/lib/python3/dist-packages/_pytest/config/__init__.py:463: in > _importconftest > raise ConftestImportFailure(conftestpath, sys.exc_info()) > E _pytest.config.ConftestImportFailure: > (local('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py'), > (<class 'ModuleNotFoundError'>, ModuleNotFoundError("No module named > 'matplotlib'"), <traceback object at 0x7f5afd189140>)) > !!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection > !!!!!!!!!!!!!!!!!!!! > =========================== 1 error in 0.70 seconds > ============================ > E: pybuild pybuild:352: test: plugin distutils failed with: exit code=2: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; python3.7 -m pytest > dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7 > 3.8" returned exit code 13 The full build log is available from: http://qa-logs.debian.net/2020/04/02/python-cobra_0.14.2-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.