Source: oasis3
Version: 3.mct+dfsg.121022-14
Severity: important
User: [email protected]
Usertags: netcdf-4.7.4
Dear Maintainer,
In preparation of the netcdf transition you package was rebuilt but it FTBFS:
make[5]: Entering directory
'/build/oasis3-3.mct+dfsg.121022/build/build/lib/mctdir/mpeu'
gcc -I/usr/include -c -DSYSLINUX -DCPR -g -O2
-fdebug-prefix-map=/build/oasis3-3.mct+dfsg.121022=. -fstack-protector-strong
-Wformat -Werror=format-security -I. -I../ get_zeits.c
/usr/bin/mpif90 -Wall -I/usr/include -c -I. -I../ -DSYSLINUX -DCPR -g -O2
-fdebug-prefix-map=/build/oasis3-3.mct+dfsg.121022=. -fstack-protector-strong
m_mpif.F90
m_mpif.F90:60: Error: Can't open included file 'mpif.h'
make[5]: *** [Makefile:70: m_mpif.o] Error 1
The full buildlog is attached.
Kind Regards,
Bas
dpkg-checkbuilddeps: error: Unmet build dependencies: mpi-default-dev
libnetcdff-dev
[1;33mW: Unmet build-dependency in source[0m
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022'
dh_clean
/usr/bin/make -C lib/mct/doc clean
make[2]: Entering directory
'/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/lib/mct/doc'
cd texsrc; make clean
make[3]: Entering directory
'/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/lib/mct/doc/texsrc'
rm -f *.F90
rm -f *.tex
make[3]: Leaving directory
'/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/lib/mct/doc/texsrc'
rm -f *.dvi *.log *.bbl *.blg *.aux *.toc
make[2]: Leaving directory
'/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/lib/mct/doc'
find . -name '.svn' -exec rm -rf {} \; || echo "Deleting .svn directories"
find: './lib/psmile/src/.svn': No such file or directory
find: './lib/psmile/.svn': No such file or directory
find: './lib/psmile/include/.svn': No such file or directory
find: './lib/mct/m4/.svn': No such file or directory
find: './lib/mct/protex/.svn': No such file or directory
find: './lib/mct/mct/.svn': No such file or directory
find: './lib/mct/mpeu/.svn': No such file or directory
find: './lib/mct/mpi-serial/.svn': No such file or directory
find: './lib/mct/.svn': No such file or directory
find: './lib/mct/doc/texsrc/.svn': No such file or directory
find: './lib/mct/doc/.svn': No such file or directory
find: './lib/mct/examples/simple/.svn': No such file or directory
find: './lib/mct/examples/.svn': No such file or directory
find: './lib/mct/examples/climate_sequen1/.svn': No such file or directory
find: './lib/mct/examples/climate_concur1/.svn': No such file or directory
find: './lib/.svn': No such file or directory
find: './lib/scrip/src/.svn': No such file or directory
find: './lib/scrip/.svn': No such file or directory
find: './doc/.svn': No such file or directory
find: './doc/figures/.svn': No such file or directory
find: './util/.svn': No such file or directory
find: './util/make_dir/.svn': No such file or directory
find: './examples/tutorial/.svn': No such file or directory
find: './examples/tutorial/data_oasis3/.svn': No such file or directory
find: './examples/test_rmp_esmf/data_esmf/.svn': No such file or directory
find: './examples/test_rmp_esmf/.svn': No such file or directory
find: './examples/test_interpolation/.svn': No such file or directory
find: './examples/test_interpolation/data_oasis3/.svn': No such file or
directory
find:
'./examples/test_interpolation/data_oasis3/namcouple_map_conserv_torc_lmdz/.svn':
No such file or directory
find: './examples/.svn': No such file or directory
Deleting .svn directories
rm -rf lib/mct/doc/*.pdf build
/usr/bin/make -C /home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/util/make_dir -f
TopMakefileOasis3 ARCH=debian
TOP=/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/ realclean ARCH=debian ||
echo "realclean done already"
make[2]: Entering directory
'/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/util/make_dir'
make -f TopMakefileOasis3 cleanlibs
make[3]: Entering directory
'/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/util/make_dir'
cleaning oasis3-mct libraries
rm -f /home/bas/tmp/debian/oasis3-3.mct+dfsg.121022//build/build/lib/scrip/*
rm -f /home/bas/tmp/debian/oasis3-3.mct+dfsg.121022//build/build/lib/mct/*
rm -f -r /home/bas/tmp/debian/oasis3-3.mct+dfsg.121022//build/build/lib/mctdir/*
rm -f
/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022//build/build/lib/psmile.MPI1/*
rm -f /home/bas/tmp/debian/oasis3-3.mct+dfsg.121022//build/lib/libscrip.a
rm -f /home/bas/tmp/debian/oasis3-3.mct+dfsg.121022//build/lib/libmct.a
rm -f /home/bas/tmp/debian/oasis3-3.mct+dfsg.121022//build/lib/libmpeu.a
rm -f /home/bas/tmp/debian/oasis3-3.mct+dfsg.121022//build/lib/libpsmile.MPI1.a
make[3]: Leaving directory
'/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/util/make_dir'
make[2]: Leaving directory
'/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022/util/make_dir'
make[1]: Leaving directory '/home/bas/tmp/debian/oasis3-3.mct+dfsg.121022'
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building oasis3 using existing
./oasis3_3.mct+dfsg.121022.orig.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building oasis3 in oasis3_3.mct+dfsg.121022-15.debian.tar.xz
dpkg-source: info: building oasis3 in oasis3_3.mct+dfsg.121022-15.dsc
[0mI: Generating source changes file for original dsc[0m
dpkg-genchanges: info: not including original source code in upload
[0mI: Copying COW directory[0m
[0mI: forking: rm -rf /var/cache/pbuilder/build/cow.13817[0m
[0mI: forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow
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[0mI: removed stale ilistfile /var/cache/pbuilder/build/cow.13817/.ilist[0m
[0mI: forking: chroot /var/cache/pbuilder/build/cow.13817
cowdancer-ilistcreate /.ilist 'find . -xdev -path ./home -prune -o \( \( -type
l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i ''[0m
[0mI: Invoking pbuilder[0m
[0mI: forking: pbuilder build --debbuildopts --debbuildopts --buildplace
/var/cache/pbuilder/build/cow.13817 --buildresult /var/cache/pbuilder/result/
--mirror http://ftp.nl.debian.org/debian/ --distribution sid --no-targz
--internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.13817 cow-shell'
/home/bas/tmp/debian/oasis3_3.mct+dfsg.121022-15.dsc[0m
[0mI: Running in no-targz mode[0m
[0mI: pbuilder: network access will be disabled during build[0m
[0mI: Current time: Sat Apr 4 16:19:09 CEST 2020[0m
[0mI: pbuilder-time-stamp: 1586009949[0m
[0mI: copying local configuration[0m
[1;33mW: --override-config is not set; not updating apt.conf Read the manpage
for details.[0m
[0mI: mounting /proc filesystem[0m
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[0mI: Obtaining the cached apt archive contents[0m
[0mI: Copying source file[0m
[0mI: copying [/home/bas/tmp/debian/oasis3_3.mct+dfsg.121022-15.dsc][0m
[0mI: copying [/home/bas/tmp/debian/oasis3_3.mct+dfsg.121022.orig.tar.xz][0m
[0mI: copying
[/home/bas/tmp/debian/oasis3_3.mct+dfsg.121022-15.debian.tar.xz][0m
[0mI: Extracting source[0m
dpkg-source: warning: extracting unsigned source package
(oasis3_3.mct+dfsg.121022-15.dsc)
dpkg-source: info: extracting oasis3 in oasis3-3.mct+dfsg.121022
dpkg-source: info: unpacking oasis3_3.mct+dfsg.121022.orig.tar.xz
dpkg-source: info: unpacking oasis3_3.mct+dfsg.121022-15.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying make-debian.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying protex.patch
dpkg-source: info: applying esc-chars.patch
[0mI: using fakeroot in build.[0m
[0mI: Installing the build-deps[0m
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <[email protected]>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: mpi-default-dev, debhelper (>= 10), dh-fortran-mod, gfortran |
fortran-mod, libnetcdf-dev (>= 1:4.3.3.1), libnetcdff-dev, libcurl4-gnutls-dev,
texlive-latex-base, texlive-latex-extra, ghostscript
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 13990 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring
anyway as you requested:
pbuilder-satisfydepends-dummy depends on mpi-default-dev; however:
Package mpi-default-dev is not installed.
pbuilder-satisfydepends-dummy depends on debhelper (>= 10); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on dh-fortran-mod; however:
Package dh-fortran-mod is not installed.
pbuilder-satisfydepends-dummy depends on gfortran | fortran-mod; however:
Package gfortran is not installed.
Package fortran-mod is not installed.
pbuilder-satisfydepends-dummy depends on libnetcdf-dev (>= 1:4.3.3.1); however:
Package libnetcdf-dev is not installed.
pbuilder-satisfydepends-dummy depends on libnetcdff-dev; however:
Package libnetcdff-dev is not installed.
pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev; however:
Package libcurl4-gnutls-dev is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
Package texlive-latex-base is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however:
Package texlive-latex-extra is not installed.
pbuilder-satisfydepends-dummy depends on ghostscript; however:
Package ghostscript is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
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pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version
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The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a}
debhelper{a} dh-autoreconf{a} dh-fortran-mod{a} dh-strip-nondeterminism{a}
dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a}
fonts-urw-base35{a} gettext{a} gettext-base{a} gfortran{a} gfortran-9{a}
ghostscript{a} groff-base{a} hdf5-helpers{a} ibverbs-providers{a}
intltool-debian{a} libaec-dev{a} libaec0{a} libapache-pom-java{a}
libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a}
libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcbor0{a}
libcommons-logging-java{a} libcommons-parent-java{a} libcroco3{a} libcups2{a}
libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdbus-1-3{a} libdebhelper-perl{a}
libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a}
libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a}
libexpat1{a} libfabric1{a} libfido2-1{a} libfile-libmagic-perl{a}
libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a}
libfreetype6{a} libgfortran-9-dev{a} libgfortran5{a} libglib2.0-0{a}
libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a}
libharfbuzz-icu0{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a}
libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a}
libhdf5-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a}
libibverbs-dev{a} libibverbs1{a} libice6{a} libicu63{a} libidn11{a}
libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a}
libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a}
libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libltdl-dev{a} libltdl7{a}
libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnetcdf-dev{a} libnetcdf18{a}
libnetcdff-dev{a} libnetcdff7{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a}
libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a}
libopenjp2-7{a} libopenmpi-dev{a} libopenmpi3{a} libpaper-utils{a} libpaper1{a}
libpciaccess0{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpmix2{a}
libpng16-16{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libptexenc1{a}
libpython3-stdlib{a} libpython3.8-minimal{a} libpython3.8-stdlib{a}
librdmacm1{a} librtmp1{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a}
libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53{a}
libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a}
libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a}
libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a}
libxnvctrl0{a} libxpm4{a} libxrender1{a} libxt6{a} libzzip-0-13{a} m4{a}
man-db{a} mime-support{a} mpi-default-dev{a} ocl-icd-libopencl1{a}
openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a}
poppler-data{a} preview-latex-style{a} python3{a} python3-minimal{a}
python3.8{a} python3.8-minimal{a} t1utils{a} tex-common{a} texlive-base{a}
texlive-binaries{a} texlive-latex-base{a} texlive-latex-extra{a}
texlive-latex-recommended{a} texlive-pictures{a} ucf{a} x11-common{a}
xdg-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl dbus dvisvgm fonts-droid-fallback krb5-locales
libarchive-cpio-perl libcoarrays-openmpi-dev libfile-mimeinfo-perl
libglib2.0-data libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl
lmodern lynx pkg-config pkgconf publicsuffix ruby shared-mime-info
texlive-fonts-recommended texlive-plain-generic tk wget x11-utils
x11-xserver-utils xauth xdg-user-dirs
0 packages upgraded, 189 newly installed, 0 to remove and 0 not upgraded.
Need to get 3272 kB/150 MB of archives. After unpacking 526 MB will be used.
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Get: 3 http://ftp.nl.debian.org/debian sid/main amd64 openmpi-bin amd64 4.0.3-1
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Get: 4 http://ftp.nl.debian.org/debian sid/main amd64 libopenmpi-dev amd64
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Setting up libfabric1 (1.6.2-3+b1) ...
Setting up libpmix2:amd64 (3.1.5-1) ...
Setting up libopenmpi3:amd64 (4.0.3-1) ...
Setting up texlive-latex-base (2019.20200302-1) ...
Setting up texlive-latex-recommended (2019.20200302-1) ...
Setting up texlive-pictures (2019.20200302-1) ...
Setting up openmpi-bin (4.0.3-1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun
(mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc
(mpi) in auto mode
Setting up texlive-latex-extra (2019.202000302-1) ...
Setting up libopenmpi-dev:amd64 (4.0.3-1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide
/usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode
Setting up mpi-default-dev (1.13) ...
Setting up debhelper (12.10) ...
Setting up dh-fortran-mod (0.16) ...
Setting up dh-autoreconf (19) ...
Processing triggers for libc-bin (2.30-4) ...
ldconfig: /usr/lib/x86_64-linux-gnu/ is not a symbolic link
Processing triggers for tex-common (6.13) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libfakeroot
The following NEW packages will be installed:
fakeroot libfakeroot
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/132 kB of archives.
After this operation, 393 kB of additional disk space will be used.
Selecting previously unselected package libfakeroot:amd64.
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(Reading database ... 36007 files and directories currently installed.)
Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ...
Unpacking libfakeroot:amd64 (1.24-1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../fakeroot_1.24-1_amd64.deb ...
Unpacking fakeroot (1.24-1) ...
Setting up libfakeroot:amd64 (1.24-1) ...
Setting up fakeroot (1.24-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot
(fakeroot) in auto mode
Processing triggers for man-db (2.9.1-1) ...
Processing triggers for libc-bin (2.30-4) ...
ldconfig: /usr/lib/x86_64-linux-gnu/ is not a symbolic link
[0mI: Copying back the cached apt archive contents[0m
[0mI: new cache content 'libopenmpi3_4.0.3-1_amd64.deb' added[0m
[0mI: new cache content 'openmpi-common_4.0.3-1_all.deb' added[0m
[0mI: new cache content 'openmpi-bin_4.0.3-1_amd64.deb' added[0m
[0mI: new cache content 'libopenmpi-dev_4.0.3-1_amd64.deb' added[0m
[0mI: Building the package[0m
[0mI: Running cd /build/oasis3-3.mct+dfsg.121022/ && env
PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us
-uc [0m
dpkg-buildpackage: info: source package oasis3
dpkg-buildpackage: info: source version 3.mct+dfsg.121022-15
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Alastair McKinstry
<[email protected]>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/build/oasis3-3.mct+dfsg.121022'
dh_clean
/usr/bin/make -C lib/mct/doc clean
make[2]: Entering directory '/build/oasis3-3.mct+dfsg.121022/lib/mct/doc'
cd texsrc; make clean
make[3]: Entering directory '/build/oasis3-3.mct+dfsg.121022/lib/mct/doc/texsrc'
rm -f *.F90
rm -f *.tex
make[3]: Leaving directory '/build/oasis3-3.mct+dfsg.121022/lib/mct/doc/texsrc'
rm -f *.dvi *.log *.bbl *.blg *.aux *.toc
make[2]: Leaving directory '/build/oasis3-3.mct+dfsg.121022/lib/mct/doc'
find . -name '.svn' -exec rm -rf {} \; || echo "Deleting .svn directories"
find: './util/.svn': No such file or directory
find: './util/make_dir/.svn': No such file or directory
find: './examples/tutorial/.svn': No such file or directory
find: './examples/tutorial/data_oasis3/.svn': No such file or directory
find: './examples/test_interpolation/.svn': No such file or directory
find:
'./examples/test_interpolation/data_oasis3/namcouple_map_conserv_torc_lmdz/.svn':
No such file or directory
find: './examples/test_interpolation/data_oasis3/.svn': No such file or
directory
find: './examples/.svn': No such file or directory
find: './examples/test_rmp_esmf/.svn': No such file or directory
find: './examples/test_rmp_esmf/data_esmf/.svn': No such file or directory
find: './doc/figures/.svn': No such file or directory
find: './doc/.svn': No such file or directory
find: './lib/mct/mct/.svn': No such file or directory
find: './lib/mct/protex/.svn': No such file or directory
find: './lib/mct/mpi-serial/.svn': No such file or directory
find: './lib/mct/examples/climate_sequen1/.svn': No such file or directory
find: './lib/mct/examples/simple/.svn': No such file or directory
find: './lib/mct/examples/.svn': No such file or directory
find: './lib/mct/examples/climate_concur1/.svn': No such file or directory
find: './lib/mct/m4/.svn': No such file or directory
find: './lib/mct/.svn': No such file or directory
find: './lib/mct/mpeu/.svn': No such file or directory
find: './lib/mct/doc/texsrc/.svn': No such file or directory
find: './lib/mct/doc/.svn': No such file or directory
find: './lib/psmile/include/.svn': No such file or directory
find: './lib/psmile/src/.svn': No such file or directory
find: './lib/psmile/.svn': No such file or directory
find: './lib/.svn': No such file or directory
find: './lib/scrip/src/.svn': No such file or directory
find: './lib/scrip/.svn': No such file or directory
Deleting .svn directories
rm -rf lib/mct/doc/*.pdf build
/usr/bin/make -C /build/oasis3-3.mct+dfsg.121022/util/make_dir -f
TopMakefileOasis3 ARCH=debian TOP=/build/oasis3-3.mct+dfsg.121022/ realclean
ARCH=debian || echo "realclean done already"
make[2]: Entering directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
make -f TopMakefileOasis3 cleanlibs
make[3]: Entering directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
cleaning oasis3-mct libraries
rm -f /build/oasis3-3.mct+dfsg.121022//build/build/lib/scrip/*
rm -f /build/oasis3-3.mct+dfsg.121022//build/build/lib/mct/*
rm -f -r /build/oasis3-3.mct+dfsg.121022//build/build/lib/mctdir/*
rm -f /build/oasis3-3.mct+dfsg.121022//build/build/lib/psmile.MPI1/*
rm -f /build/oasis3-3.mct+dfsg.121022//build/lib/libscrip.a
rm -f /build/oasis3-3.mct+dfsg.121022//build/lib/libmct.a
rm -f /build/oasis3-3.mct+dfsg.121022//build/lib/libmpeu.a
rm -f /build/oasis3-3.mct+dfsg.121022//build/lib/libpsmile.MPI1.a
make[3]: Leaving directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
make[2]: Leaving directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
make[1]: Leaving directory '/build/oasis3-3.mct+dfsg.121022'
dpkg-source -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building oasis3 using existing
./oasis3_3.mct+dfsg.121022.orig.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building oasis3 in oasis3_3.mct+dfsg.121022-15.debian.tar.xz
dpkg-source: info: building oasis3 in oasis3_3.mct+dfsg.121022-15.dsc
debian/rules build
dh build
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/oasis3-3.mct+dfsg.121022'
/usr/bin/make -C /build/oasis3-3.mct+dfsg.121022/util/make_dir -f
TopMakefileOasis3 ARCH=debian TOP=/build/oasis3-3.mct+dfsg.121022/ CHAN=MPI1
default
make[2]: Entering directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
make -f TopMakefileOasis3 makedirs
make[3]: Entering directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
make[3]: Leaving directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
make -f TopMakefileOasis3 makemct
make[3]: Entering directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
=> Compiling library mpeu and mct
(cd /build/oasis3-3.mct+dfsg.121022//build/build/lib/mctdir; cp -f -r -p
/build/oasis3-3.mct+dfsg.121022//lib/mct/* .;\
./configure MPIFC="/usr/bin/mpif90 -Wall -I/usr/include"
FC="/usr/bin/mpif90 -Wall -I/usr/include" CC="gcc -I/usr/include" ; \
make ; \
cp -f ./*/lib*.a /build/oasis3-3.mct+dfsg.121022//build/lib/; \
cp -f ./*/*.o
/build/oasis3-3.mct+dfsg.121022//build/build/lib/mct/; \
cp -f ./*/*.mod
/build/oasis3-3.mct+dfsg.121022//build/build/lib/mct/;)
hostname: Temporary failure in name resolution
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -I/usr/include accepts -g... yes
checking for gcc -I/usr/include option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -I/usr/include -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking whether we are using the GNU Fortran compiler... yes
checking whether /usr/bin/mpif90 -Wall -I/usr/include accepts -g... yes
checking for Fortran flag to compile .F90 files... none
checking for mpif90... /usr/bin/mpif90 -Wall -I/usr/include
checking for MPI_Init... yes
checking for mpif.h... no
Checking Compiler Version
checking how to get the version output from /usr/bin/mpif90 -Wall
-I/usr/include... --version
checking for Fortran flag to compile preprocessed .F files... none
checking how to define symbols for preprocessed Fortran... -D
checking how to get verbose linking output from /usr/bin/mpif90 -Wall
-I/usr/include... -v
checking for Fortran libraries of /usr/bin/mpif90 -Wall -I/usr/include...
-L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran
-L/usr/lib/gcc/x86_64-linux-gnu/9
-L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. -lmpi_usempif08
-lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl
-levent -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lquadmath -lpthread
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra
underscore
Hostname=anubis
Machine=x86_64
OS=Linux
Output Variables: {CC=gcc -I/usr/include} {CFLAGS=-g -O2
-fdebug-prefix-map=/build/oasis3-3.mct+dfsg.121022=. -fstack-protector-strong
-Wformat -Werror=format-security} {FC=/usr/bin/mpif90 -Wall -I/usr/include}
{FCFLAGS=-g -O2 -fdebug-prefix-map=/build/oasis3-3.mct+dfsg.121022=.
-fstack-protector-strong} {PROGFCFLAGS=}{CPPDEFS= -DSYSLINUX -DCPR} {OPT=}
{DEBUG=} {REAL8=} {BIT64=} {ENDIAN=} {MPIFC=/usr/bin/mpif90 -Wall
-I/usr/include} {MPILIBS=} {MPIHEADER=} {INCLUDEFLAG=-I} {INCLUDEPATH=} {AR=ar
cq} {BABELROOT=} {COMPILER_ROOT=} {PYTHON=} {PYTHONOPTS=} {FORT_SIZE=}
{prefix=NONE} {SRCDIR=} {FC_DEFINE=-D}
configure: creating ./config.status
config.status: creating Makefile.conf
config.status: creating config.h
Please check the Makefile.conf
Have a nice day!
make[4]: Entering directory
'/build/oasis3-3.mct+dfsg.121022/build/build/lib/mctdir'
make[5]: Entering directory
'/build/oasis3-3.mct+dfsg.121022/build/build/lib/mctdir/mpeu'
gcc -I/usr/include -c -DSYSLINUX -DCPR -g -O2
-fdebug-prefix-map=/build/oasis3-3.mct+dfsg.121022=. -fstack-protector-strong
-Wformat -Werror=format-security -I. -I../ get_zeits.c
/usr/bin/mpif90 -Wall -I/usr/include -c -I. -I../ -DSYSLINUX -DCPR -g -O2
-fdebug-prefix-map=/build/oasis3-3.mct+dfsg.121022=. -fstack-protector-strong
m_mpif.F90
m_mpif.F90:60: Error: Can't open included file 'mpif.h'
make[5]: *** [Makefile:70: m_mpif.o] Error 1
make[5]: Leaving directory
'/build/oasis3-3.mct+dfsg.121022/build/build/lib/mctdir/mpeu'
make[4]: *** [Makefile:10: subdirs] Error 2
make[4]: Leaving directory
'/build/oasis3-3.mct+dfsg.121022/build/build/lib/mctdir'
cp: cannot stat './*/lib*.a': No such file or directory
cp: cannot stat './*/*.mod': No such file or directory
make[3]: *** [TopMakefileOasis3:53: makemct] Error 1
make[3]: Leaving directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
make[2]: *** [TopMakefileOasis3:27: default] Error 2
make[2]: Leaving directory '/build/oasis3-3.mct+dfsg.121022/util/make_dir'
make[1]: *** [debian/rules:18: override_dh_auto_build] Error 2
make[1]: Leaving directory '/build/oasis3-3.mct+dfsg.121022'
make: *** [debian/rules:5: build] Error 2
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
[0mI: copying local configuration[0m
[0;31mE: Failed autobuilding of package[0m
[0mI: unmounting dev/ptmx filesystem[0m
[0mI: unmounting dev/pts filesystem[0m
[0mI: unmounting dev/shm filesystem[0m
[0mI: unmounting proc filesystem[0m
[0mI: unmounting sys filesystem[0m
[0mI: Cleaning COW directory[0m
[0mI: forking: rm -rf /var/cache/pbuilder/build/cow.13817[0m
