Package: wnpp Severity: wishlist Subject: ITP: python-nanomath -- simple math function for other Oxford Nanopore processing scripts Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : python-nanomath Version : 0.23.1 Upstream Author : Wouter De Coster <decosterwou...@gmail.com> * URL : https://github.com/wdecoster/nanomath * License : GPL-3+ Programming Lang: Python Description : simple math function for other Oxford Nanopore processing scripts This Python3 module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data. . * Calculate read N50 from a set of lengths get_N50(readlenghts) * Remove extreme length outliers from a dataset remove_length_outliers(dataframe, columname) * Calculate the average Phred quality of a read ave_qual(qualscores) * Write out the statistics report after calling readstats function write_stats(dataframe, outputname) * Compute a number of statistics, return a dictionary calc_read_stats(dataframe) Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/python-nanomath