Hi Andreas, Yes definitely, this is long overdue. I have a report due for submission tonight, so I'll get to this tomorrow for sure.
Regards, Pranav On Tue, 9 Jun, 2020, 7:41 PM Andreas Tille, <andr...@an3as.eu> wrote: > Hi Pranav, > > since you dealt with tests in this package could you please have > a look? > > Kind regards > > Andreas. > > On Sat, May 16, 2020 at 02:50:12PM +0300, Adrian Bunk wrote: > > Source: tree-puzzle > > Version: 5.3~rc16+dfsg-1 > > Severity: serious > > Tags: ftbfs > > > > Based on the "Important remark" below, test failures shouldn't be fatal. > > This would also make them not suitable for autopkgtest. > > > > > > https://buildd.debian.org/status/package.php?p=tree-puzzle&suite=sid > > > > ... > > FAIL: qp-hky-rhet-nucl > > ====================== > > > > > > Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling > (qp-hky-rhet-nucl) > > 327c327 > > < Dasyurus 3 0.00001 0.00268 11 0.07879 0.07178 > > --- > > > Dasyurus 3 0.00001 0.00141 11 0.07879 0.07178 > > FAIL qp-hky-rhet-nucl.test (exit status: 1) > > > > FAIL: qp-hky-rhet-clock-nucl > > ============================ > > > > > > Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet > puzzling (qp-hky-rhet-clock-nucl) > > 327c327 > > < Dasyurus 3 0.00001 0.00268 11 0.07879 0.07178 > > --- > > > Dasyurus 3 0.00001 0.00141 11 0.07879 0.07178 > > FAIL qp-hky-rhet-clock-nucl.test (exit status: 1) > > > > FAIL: qp-jtt-rhet-prot > > ====================== > > > > > > Testing: protein data, JTT, rate heterogeneity, quartet puzzling > (qp-jtt-rhet-prot) > > 295c295 > > < HBA_HUMAN 3 0.01975 0.02293 10 0.74671 0.14184 > > --- > > > HBA_HUMAN 3 0.01975 0.02294 10 0.74671 0.14184 > > FAIL qp-jtt-rhet-prot.test (exit status: 1) > > > > FAIL: qp-jtt-rhet-clock-prot > > ============================ > > > > > > Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling > (qp-jtt-rhet-clock-prot) > > 295c295 > > < HBA_HUMAN 3 0.01975 0.02293 10 0.74671 0.14184 > > --- > > > HBA_HUMAN 3 0.01975 0.02294 10 0.74671 0.14184 > > FAIL qp-jtt-rhet-clock-prot.test (exit status: 1) > > > > FAIL: ut-pure-prot > > ================== > > > > > > Testing: protein data, default model, user tree evaluation (ut-pure-prot) > > 178c178 > > < HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00105 > > --- > > > HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00100 > > 218c218 > > < HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08777 > > --- > > > HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08778 > > 258c258 > > < HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15663 > > --- > > > HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15661 > > FAIL ut-pure-prot.test (exit status: 1) > > > > FAIL: cons-pure-prot > > ==================== > > > > > > Testing: protein data, default model, consensus construction > (cons-pure-prot) > > 230c230 > > < HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08745 > > --- > > > HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08746 > > FAIL cons-pure-prot.test (exit status: 1) > > > > SKIP: build-remark > > ================== > > > > > > *** > > *** !!! Important remark !!! > > *** > > *** Please note that only the output file *.puzzle is checked > > *** for identity. The overall precision reached in the program > > *** is heavily dependent on the compiler as well as the optimization > > *** level (-O) used to compile the executable. > > *** Hence, even if tests are marked as failed this might just be > > *** due to differences in less significant digits caused by rounding > > *** errors from less acurate computations for the sake of faster > > *** running times. (If you want to be sure about this please refer > > *** to your compiler's manual!) > > *** > > *** Please check the output file differences which are printed during > the tests. > > *** The template files which the results are checked against have been > > *** generated with TREE-PUZZLE 5.2 compiled with GCC version > 3.3-20030226 > > *** and default compiler flags '-g -O2' and using the SPRNG random > number > > *** generator. > > *** > > > > SKIP build-remark (exit status: 77) > > > > > ============================================================================ > > Testsuite summary for tree-puzzle 5.3.rc16 > > > ============================================================================ > > # TOTAL: 19 > > # PASS: 11 > > # SKIP: 2 > > # XFAIL: 0 > > # FAIL: 6 > > # XPASS: 0 > > # ERROR: 0 > > > ============================================================================ > > See tests/test-suite.log > > > ============================================================================ > > make[5]: *** [Makefile:563: test-suite.log] Error 1 > > make[5]: Leaving directory '/<<PKGBUILDDIR>>/tests' > > > > _______________________________________________ > > Debian-med-packaging mailing list > > debian-med-packag...@alioth-lists.debian.net > > > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging > > -- > http://fam-tille.de >
