Package: libopenmpi3
Followup-For: Bug #965352
Build log for dolfin 2019.2.0~git20200218.027d9cc-12 indicates a
problem with malloc in libucs.so, one of the new features (UCX) added
in openmpi 4.0.4-2.
Run C++ regression tests (MPI)
Test project /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
Start 2: demo_auto-adaptive-poisson_mpi
Start 4: demo_bcs_mpi
1/49 Test #2: demo_auto-adaptive-poisson_mpi ......... Passed 0.59 sec
Start 6: demo_biharmonic_mpi
2/49 Test #4: demo_bcs_mpi ...........................***Failed 1.75 sec
malloc(): mismatching next->prev_size (unsorted)
[x86-grnet-01:17654] *** Process received signal ***
[x86-grnet-01:17654] Signal: Aborted (6)
[x86-grnet-01:17654] Signal code: (-6)
[x86-grnet-01:17654] [ 0]
/lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7f1882828d30]
[x86-grnet-01:17654] [ 1]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7f1882828cb1]
[x86-grnet-01:17654] [ 2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7f1882812537]
[x86-grnet-01:17654] [ 3]
/lib/x86_64-linux-gnu/libc.so.6(+0x7e738)[0x7f188286b738]
[x86-grnet-01:17654] [ 4]
/lib/x86_64-linux-gnu/libc.so.6(+0x85a2a)[0x7f1882872a2a]
[x86-grnet-01:17654] [ 5]
/lib/x86_64-linux-gnu/libc.so.6(+0x88e7c)[0x7f1882875e7c]
[x86-grnet-01:17654] [ 6]
/lib/x86_64-linux-gnu/libc.so.6(__libc_malloc+0x1a9)[0x7f1882877269]
[x86-grnet-01:17654] [ 7]
/usr/lib/x86_64-linux-gnu/libucs.so.0(ucs_mpool_chunk_malloc+0xc)[0x7f187c969bfc]
[x86-grnet-01:17654] [ 8]
/usr/lib/x86_64-linux-gnu/libucs.so.0(ucs_mpool_grow+0x60)[0x7f187c969980]
[x86-grnet-01:17654] [ 9]
/usr/lib/x86_64-linux-gnu/libucs.so.0(ucs_mpool_get_grow+0x10)[0x7f187c969ba0]
[x86-grnet-01:17654] [10]
/usr/lib/x86_64-linux-gnu/libuct.so.0(+0x1b155)[0x7f187c930155]
[x86-grnet-01:17654] [11]
/usr/lib/x86_64-linux-gnu/libuct.so.0(+0x1a630)[0x7f187c92f630]
[x86-grnet-01:17654] [12]
/usr/lib/x86_64-linux-gnu/libuct.so.0(+0x1cd4e)[0x7f187c931d4e]
[x86-grnet-01:17654] [13]
/usr/lib/x86_64-linux-gnu/libucs.so.0(ucs_event_set_wait+0xfd)[0x7f187c975bed]
[x86-grnet-01:17654] [14]
/usr/lib/x86_64-linux-gnu/libuct.so.0(uct_tcp_iface_progress+0x8f)[0x7f187c931e3f]
[x86-grnet-01:17654] [15]
/usr/lib/x86_64-linux-gnu/libucp.so.0(ucp_worker_progress+0x6a)[0x7f187cdf557a]
[x86-grnet-01:17654] [16]
/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pml_ucx.so(mca_pml_ucx_recv+0x118)[0x7f187ce6ae68]
[x86-grnet-01:17654] [17]
/usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_coll_base_scan_intra_linear+0x12b)[0x7f188205575b]
[x86-grnet-01:17654] [18]
/usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Scan+0x128)[0x7f18820269b8]
[x86-grnet-01:17654] [19]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin3MPI13global_offsetEP19ompi_communicator_tmb+0x4a)[0x7f1882ef790a]
[x86-grnet-01:17654] [20]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin12GraphBuilder30compute_local_dual_graph_keyedILi3EEEiP19ompi_communicator_tRKN5boost11multi_arrayIlLm2ESaIlEEERKNS_8CellTypeERSt6vectorISD_ImSaImEESaISF_EERSD_ISt4pairISF_iESaISK_EE+0x1d4)[0x7f188300c994]
[x86-grnet-01:17654] [21]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin12GraphBuilder24compute_local_dual_graphEP19ompi_communicator_tRKN5boost11multi_arrayIlLm2ESaIlEEERKNS_8CellTypeERSt6vectorISC_ImSaImEESaISE_EERSC_ISt4pairISE_iESaISJ_EE+0x2fa)[0x7f1883007eba]
[x86-grnet-01:17654] [22]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin12GraphBuilder18compute_dual_graphEP19ompi_communicator_tRKN5boost11multi_arrayIlLm2ESaIlEEERKNS_8CellTypeElRSt6vectorISC_ImSaImEESaISE_EERSt3setIlSt4lessIlES5_E+0xf3)[0x7f1883008003]
[x86-grnet-01:17654] [23]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin6SCOTCH17compute_partitionEP19ompi_communicator_tRSt6vectorIiSaIiEERSt3mapIlS5_St4lessIlESaISt4pairIKlS5_EEERKN5boost11multi_arrayIlLm2ESaIlEEERKS3_ImSaImEEllRKNS_8CellTypeE+0x99)[0x7f18830100e9]
[x86-grnet-01:17654] [24]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin16MeshPartitioning15partition_cellsERKP19ompi_communicator_tRKNS_13LocalMeshDataENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERSt6vectorIiSaIiEERSt3mapIlSG_St4lessIlESaISt4pairIKlSG_EEE+0x180)[0x7f18831f72e0]
[x86-grnet-01:17654] [25]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin16MeshPartitioning22build_distributed_meshERNS_4MeshERKNS_13LocalMeshDataENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x403)[0x7f18831fec93]
[x86-grnet-01:17654] [26]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin7XMLFile4readERNS_4MeshE+0x196)[0x7f18830dddd6]
[x86-grnet-01:17654] [27]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin4MeshC1EP19ompi_communicator_tNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x2bb)[0x7f18831e700b]
[x86-grnet-01:17654] [28]
/<<PKGBUILDDIR>>//obj-x86_64-linux-gnu/dolfin/libdolfin.so.2019.2(_ZN6dolfin4MeshC1ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x4e)[0x7f18831e70de]
[x86-grnet-01:17654] [29] ./demo_bcs(+0x683d)[0x55ade19e983d]
[x86-grnet-01:17654] *** End of error message ***
