Source: embassy-phylip Version: 3.69.660-3 Severity: serious Tags: ftbfs sid bullseye Justification: fails to build from source User: [email protected] Usertags: ftbfs-gcc-10
Hi, embassy-phylip started to FTBFS when GCC 10 was made the default compiler: /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/embassy-phylip-3.69.660=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplo t -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-z,relro -Wl,--as-needed -o fclique clique.o disc.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/embassy-phylip-3.69.660=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-z,relro -Wl,--as-needed -o fconsense consense.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/embassy-phylip-3.69.660=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-z,relro -Wl,--as-needed -o fcontml contml.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/embassy-phylip-3.69.660=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-z -Wl,relro -Wl,--as-needed -o fclique clique.o disc.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm /usr/bin/ld: disc.o:./src/disc.c:4: multiple definition of `phylostates'; clique.o:./src/clique.c:12: first defined here /usr/bin/ld: phylip.o:./src/phylip.c:43: multiple definition of `embossouttree'; clique.o:./src/clique.c:76: first defined here /usr/bin/ld: phylip.o:./src/phylip.c:40: multiple definition of `embossoutfile'; clique.o:./src/clique.c:75: first defined here libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/embassy-phylip-3.69.660=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-z -Wl,relro -Wl,--as-needed -o fconsense consense.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm /usr/bin/ld: phylip.o:./src/phylip.c:43: multiple definition of `embossouttree'; consense.o:./src/consense.c:23: first defined here /usr/bin/ld: phylip.o:./src/phylip.c:40: multiple definition of `embossoutfile'; consense.o:./src/consense.c:22: first defined here libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/embassy-phylip-3.69.660=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-z -Wl,relro -Wl,--as-needed -o fcontml contml.o cont.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lgd -lpng -lz -lm /usr/bin/ld: phylip.o:./src/phylip.c:43: multiple definition of `embossouttree'; contml.o:./src/contml.c:73: first defined here /usr/bin/ld: phylip.o:./src/phylip.c:40: multiple definition of `embossoutfile'; contml.o:./src/contml.c:72: first defined here collect2: error: ld returned 1 exit status make[3]: *** [Makefile:1193: fclique] Error 1 make[3]: *** Waiting for unfinished jobs.... collect2: error: ld returned 1 exit status make[3]: *** [Makefile:1197: fconsense] Error 1 collect2: error: ld returned 1 exit status make[3]: *** [Makefile:1201: fcontml] Error 1 make[3]: Leaving directory '/build/embassy-phylip-3.69.660/src' make[2]: *** [Makefile:1093: all] Error 2 make[2]: Leaving directory '/build/embassy-phylip-3.69.660/src' make[1]: *** [Makefile:425: all-recursive] Error 1 make[1]: Leaving directory '/build/embassy-phylip-3.69.660' dh_auto_build: error: make -j3 returned exit code 2 make: *** [debian/rules:7: build] Error 25 More information about the corresponding GCC change can be found here: https://gcc.gnu.org/gcc-10/porting_to.html "Default to -fno-common" Andreas
