Package: wnpp Severity: wishlist Owner: Nilesh Patra <npatra...@gmail.com> X-Debbugs-CC: debian-de...@lists.debian.org
* Package name : ggd-utils Version : 0.0.7+ds Upstream Author : gogetdata * URL : github.com/gogetdata/ggd-utils * License : Expat Programming Lang: Golang Description : programs for use in ggd Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that: . * a .tbi is present * the VCF has ""##fileformat=VCF" as the first line * the VCF has a #CHROM header * the chromosome are in the order specified by the genome file (and present) * the positions are sorted * the positions are <= the chromosome lengths defined in the genome file. . As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes I shall maintain this package.