Source: plast Version: 2.3.2+dfsg-3 Severity: serious Justification: FTBFS on arm64 Tags: bullseye sid ftbfs Usertags: ftbfs-20201205 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on arm64 (I don't know if it also fails on amd64). Relevant part (hopefully): > /usr/bin/c++ -D__LINUX__ -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/include > -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux > -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 > -funroll-loops -fomit-frame-pointer -o > CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c > /<<PKGBUILDDIR>>/src/algo/hits/hsp/HspExtensionCmd.cpp > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp: In member > function ‘void > algo::hits::gapped::SmallGapHitIteratorSSE8::computeScores(size_t, const > LETTER*, const LETTER*, int*)’: > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:294:5: error: > ‘__m128i’ was not declared in this scope > 294 | __m128i vscore_gap_col; > | ^~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:295:12: error: > expected ‘;’ before ‘vscore_gap_row’ > 295 | __m128i vscore_gap_row; > | ^~~~~~~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:296:12: error: > expected ‘;’ before ‘vnext_score’ > 296 | __m128i vnext_score; > | ^~~~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:297:12: error: > expected ‘;’ before ‘vscore’ > 297 | __m128i vscore; > | ^~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:298:12: error: > expected ‘;’ before ‘vbest_score’ > 298 | __m128i vbest_score; > | ^~~~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:299:12: error: > expected ‘;’ before ‘vbest_gap_arr’ > 299 | __m128i vbest_gap_arr[neighbourLength]; > | ^~~~~~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:300:12: error: > expected ‘;’ before ‘vbest_arr’ > 300 | __m128i vbest_arr[neighbourLength]; > | ^~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:301:12: error: > expected ‘;’ before ‘vgap_extend’ > 301 | __m128i vgap_extend; > | ^~~~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:302:12: error: > expected ‘;’ before ‘vgap_open’ > 302 | __m128i vgap_open; > | ^~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:303:12: error: > expected ‘;’ before ‘vgap_open_extend’ > 303 | __m128i vgap_open_extend; > | ^~~~~~~~~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:304:12: error: > expected ‘;’ before ‘vscore_min’ > 304 | __m128i vscore_min; > | ^~~~~~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:305:12: error: > expected ‘;’ before ‘vtemp’ > 305 | __m128i vtemp; > | ^~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:306:12: error: > expected ‘;’ before ‘vtemp1’ > 306 | __m128i vtemp1; > | ^~~~~~~ > | ; > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:309:5: error: > ‘vgap_extend’ was not declared in this scope > 309 | vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost); > | ^~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:309:19: error: > ‘_mm_set1_epi16’ was not declared in this scope > 309 | vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost); > | ^~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:312:5: error: > ‘vgap_open’ was not declared in this scope > 312 | vgap_open = _mm_set1_epi16 (-_parameters->openGapCost); > | ^~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:315:5: error: > ‘vgap_open_extend’ was not declared in this scope > 315 | vgap_open_extend = _mm_set1_epi16 (-(_parameters->openGapCost + > _parameters->extendGapCost)); > | ^~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:318:5: error: > ‘vscore_min’ was not declared in this scope > 318 | vscore_min = _mm_set1_epi16 (-100); > | ^~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:330:9: error: > ‘vbest_arr’ was not declared in this scope > 330 | vbest_arr[0] = _mm_set1_epi16(0); > | ^~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:333:26: error: > ‘vscore’ was not declared in this scope; did you mean ‘core’? > 333 | _mm_store_si128(&vscore, vgap_open_extend); > | ^~~~~~ > | core > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:333:9: error: > ‘_mm_store_si128’ was not declared in this scope > 333 | _mm_store_si128(&vscore, vgap_open_extend); > | ^~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:336:26: error: > ‘vbest_gap_arr’ was not declared in this scope > 336 | _mm_store_si128 (vbest_gap_arr, vgap_open_extend); > | ^~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:344:13: error: > ‘vtemp’ was not declared in this scope; did you mean ‘mktemp’? > 344 | vtemp = _mm_adds_epi16 (vscore, vgap_open_extend); > | ^~~~~ > | mktemp > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:344:21: error: > ‘_mm_adds_epi16’ was not declared in this scope > 344 | vtemp = _mm_adds_epi16 (vscore, vgap_open_extend); > | ^~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:352:9: error: > ‘vbest_score’ was not declared in this scope > 352 | vbest_score = _mm_set1_epi16(0); > | ^~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:363:31: error: > ‘vscore_gap_row’ was not declared in this scope > 363 | _mm_store_si128 (&vscore_gap_row, vscore_min); > | ^~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:371:35: error: > ‘vscore_gap_col’ was not declared in this scope > 371 | _mm_store_si128 (&vscore_gap_col, *(vbest_gap_arr+j)); > | ^~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:389:17: error: > ‘vtemp’ was not declared in this scope; did you mean ‘mktemp’? > 389 | vtemp = _mm_set_epi16 ( > | ^~~~~ > | mktemp > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:389:25: error: > ‘_mm_set_epi16’ was not declared in this scope > 389 | vtemp = _mm_set_epi16 ( > | ^~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:395:25: error: > ‘_mm_adds_epi16’ was not declared in this scope > 395 | vtemp = _mm_adds_epi16 (vtemp,*(vbest_arr+j)); > | ^~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:396:35: error: > ‘vnext_score’ was not declared in this scope > 396 | _mm_store_si128 (&vnext_score,vtemp); > | ^~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:400:26: error: > ‘_mm_max_epi16’ was not declared in this scope > 400 | vscore = _mm_max_epi16 (vscore, vscore_gap_col); > | ^~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:419:17: error: > ‘vtemp1’ was not declared in this scope > 419 | vtemp1 = _mm_max_epi16 (vtemp, vscore_gap_col); > | ^~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:441:17: error: > ‘vtemp’ was not declared in this scope; did you mean ‘mktemp’? > 441 | vtemp = _mm_adds_epi16 (vscore_gap_row, > vgap_open_extend); > | ^~~~~ > | mktemp > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:441:25: error: > ‘_mm_adds_epi16’ was not declared in this scope > 441 | vtemp = _mm_adds_epi16 (vscore_gap_row, > vgap_open_extend); > | ^~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:450:22: error: > ‘_mm_extract_epi16’ was not declared in this scope > 450 | scores[0] = _mm_extract_epi16 (vbest_score,0); > | ^~~~~~~~~~~~~~~~~ > [ 8%] Building CXX object > CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o > /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ > -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/include > -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux > -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 > -funroll-loops -fomit-frame-pointer -o > CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c > /<<PKGBUILDDIR>>/src/algo/core/impl/DefaultAlgoConfig.cpp > make[3]: *** [CMakeFiles/plast.dir/build.make:280: > CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/12/05/plast_2.3.2+dfsg-3_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with me so that we can identify if something relevant changed in the meantime. About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.