Source: pynwb Version: 1.2.1-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20201226 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules build > dh build --with python3 --buildsystem=pybuild > dh_update_autotools_config -O--buildsystem=pybuild > dh_autoreconf -O--buildsystem=pybuild > dh_auto_configure -O--buildsystem=pybuild > pybuild --configure -i python{version} -p 3.9 > I: pybuild base:232: python3.9 setup.py config > found these packages: ['pynwb', 'pynwb.legacy', 'pynwb.testing', 'pynwb.io', > 'pynwb.legacy.io'] > ['h5py>=2.9', 'hdmf>=1.5.4,<2', 'numpy>=1.16', 'pandas>=0.23', > 'python-dateutil>=2.7'] > running config > dh_auto_build -O--buildsystem=pybuild > pybuild --build -i python{version} -p 3.9 > I: pybuild base:232: /usr/bin/python3 setup.py build > found these packages: ['pynwb', 'pynwb.legacy', 'pynwb.testing', 'pynwb.io', > 'pynwb.legacy.io'] > ['h5py>=2.9', 'hdmf>=1.5.4,<2', 'numpy>=1.16', 'pandas>=0.23', > 'python-dateutil>=2.7'] > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/validate.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/ecephys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/core.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/retinotopy.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/spec.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/image.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/misc.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/file.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/_version.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/device.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/icephys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/ogen.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/ophys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/behavior.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/base.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > copying src/pynwb/epoch.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy > copying src/pynwb/legacy/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy > copying src/pynwb/legacy/map.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing > copying src/pynwb/testing/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing > copying src/pynwb/testing/make_test_files.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing > copying src/pynwb/testing/utils.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing > copying src/pynwb/testing/testh5io.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/ecephys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/core.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/retinotopy.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/image.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/misc.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/file.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/icephys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/ogen.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/ophys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/behavior.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/base.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > copying src/pynwb/io/epoch.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/ecephys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/retinotopy.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/image.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/misc.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/file.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/icephys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/ogen.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/ophys.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/behavior.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/base.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > copying src/pynwb/legacy/io/epoch.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/legacy/io > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.retinotopy.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.epoch.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.image.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.base.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.icephys.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.behavior.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.ophys.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.ecephys.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.file.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.misc.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.namespace.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > copying src/pynwb/nwb-schema/core/nwb.ogen.yaml -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/nwb-schema/core > UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/_version.py > set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/_version.py to > '1.2.1' > dh_auto_test -O--buildsystem=pybuild > pybuild --test -i python{version} -p 3.9 > I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build; > python3.9 -m unittest discover -v > test_read (tests.back_compat.test_read.TestReadOldVersions) > Attempt to read and validate all NWB files in the same folder as this file. > The folder should contain NWB files ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/back_compat/test_read.py:24: > UserWarning: 1.0.3_str_experimenter.nwb: root/general/experimenter > (general/experimenter): incorrect shape - expected an array of shape > '[None]', got non-array data 'one experimenter' > warnings.warn('%s: %s' % (f.name, e)) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/back_compat/test_read.py:24: > UserWarning: 1.0.3_str_pub.nwb: root/general/related_publications > (general/related_publications): incorrect shape - expected an array of shape > '[None]', got non-array data 'one publication' > warnings.warn('%s: %s' % (f.name, e)) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/back_compat/test_read.py:24: > UserWarning: 1.0.2_str_experimenter.nwb: root/general/experimenter > (general/experimenter): incorrect shape - expected an array of shape > '[None]', got non-array data 'one experimenter' > warnings.warn('%s: %s' % (f.name, e)) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/back_compat/test_read.py:24: > UserWarning: 1.0.2_str_pub.nwb: root/general/related_publications > (general/related_publications): incorrect shape - expected an array of shape > '[None]', got non-array data 'one publication' > warnings.warn('%s: %s' % (f.name, e)) > ok > test_roundtrip (tests.integration.hdf5.test_base.TestTimeSeriesIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'TimeSeries/timestamps': Value with data type > int64 is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_timestamps_linking > (tests.integration.hdf5.test_base.TestTimeSeriesLinking) > Test that timestamps get linked to in TimeSeries ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:256: > DtypeConversionWarning: Spec 'TimeSeries/timestamps': Value with data type > int64 is being converted to data type float64 as specified. > warnings.warn(full_warning_msg, DtypeConversionWarning) > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(msg, MissingRequiredBuildWarning) > ok > test_roundtrip (tests.integration.hdf5.test_device.TestDeviceIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip > (tests.integration.hdf5.test_ecephys.ClusterWaveformsConstructor) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ecephys.EventDetectionConstructor) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ecephys.EventWaveformConstructor) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'SpikeEventSeries/timestamps': Value with data > type int64 is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > ok > test_roundtrip > (tests.integration.hdf5.test_ecephys.FeatureExtractionConstructor) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ecephys.TestClusteringIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_eg_ref (tests.integration.hdf5.test_ecephys.TestElectricalSeriesIO) > Test that the electrode DynamicTableRegion references of the read > ElectricalSeries have a group that ... ok > test_roundtrip (tests.integration.hdf5.test_ecephys.TestElectricalSeriesIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ecephys.TestElectrodeGroupIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ecephys.TestFilteredEphysIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ecephys.TestLFPIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_icephys.TestCurrentClampSeries) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip > (tests.integration.hdf5.test_icephys.TestCurrentClampStimulusSeries) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_icephys.TestIZeroClampSeries) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip > (tests.integration.hdf5.test_icephys.TestIntracellularElectrode) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_icephys.TestPatchClampSeries) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'PatchClampSeries/sweep_number': Value with > data type int64 is being converted to data type uint64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'SweepTable/sweep_number': Value with data type > int64 is being converted to data type uint64 as specified. > warnings.warn(w.message, w.category) > ok > test_container > (tests.integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated) > Test properties of the SweepTable read from file ... ok > test_roundtrip > (tests.integration.hdf5.test_icephys.TestSweepTableRoundTripComplicated) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'PatchClampSeries/sweep_number': Value with > data type int64 is being converted to data type uint64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'SweepTable/sweep_number': Value with data type > int64 is being converted to data type uint64 as specified. > warnings.warn(w.message, w.category) > ok > test_container > (tests.integration.hdf5.test_icephys.TestSweepTableRoundTripEasy) > Test properties of the SweepTable read from file ... ok > test_roundtrip > (tests.integration.hdf5.test_icephys.TestSweepTableRoundTripEasy) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'PatchClampSeries/sweep_number': Value with > data type int64 is being converted to data type uint64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'SweepTable/sweep_number': Value with data type > int64 is being converted to data type uint64 as specified. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_icephys.TestVoltageClampSeries) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip > (tests.integration.hdf5.test_icephys.TestVoltageClampStimulusSeries) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_image.TestOpticalSeriesIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'OpticalSeries/timestamps': Value with data > type int64 is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_misc.TestDecompositionSeriesIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_misc.TestUnitsFileIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_to_dataframe (tests.integration.hdf5.test_misc.TestUnitsFileIO) ... ok > test_get_obs_intervals (tests.integration.hdf5.test_misc.TestUnitsIO) > Test whether the Units observation intervals read from file are what was > written ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'Units/spike_times': Value with data type int64 > is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'Units/obs_intervals': Value with data type > int64 is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_get_spike_times (tests.integration.hdf5.test_misc.TestUnitsIO) > Test whether the Units spike times read from file are what was written ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'Units/spike_times': Value with data type int64 > is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'Units/obs_intervals': Value with data type > int64 is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_misc.TestUnitsIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'Units/spike_times': Value with data type int64 > is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'Units/obs_intervals': Value with data type > int64 is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_link_root > (tests.integration.hdf5.test_modular_storage.TestTimeSeriesModular) ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(msg, MissingRequiredBuildWarning) > ok > test_roundtrip > (tests.integration.hdf5.test_modular_storage.TestTimeSeriesModular) ... ok > test_roundtrip > (tests.integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_to_dataframe > (tests.integration.hdf5.test_nwbfile.TestDynamicTableFromDataframeIO) ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestElectrodes) ... ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestElectrodesRegion) ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > DtypeConversionWarning: Spec 'ElectricalSeries/timestamps': Value with data > type int64 is being converted to data type float64 as specified. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestEmptySubjectIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestEpochsIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_df_comparison (tests.integration.hdf5.test_nwbfile.TestEpochsIODf) > Test that the epochs read from file converted to a data frame are the same as > the data frame converted ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_df_comparison_no_ts (tests.integration.hdf5.test_nwbfile.TestEpochsIODf) > Test that the epochs read from file converted to a data frame are the same as > the data frame converted ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestEpochsIODf) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip > (tests.integration.hdf5.test_nwbfile.TestExperimentersConstructorRoundtrip) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(msg, MissingRequiredBuildWarning) > ok > test_roundtrip > (tests.integration.hdf5.test_nwbfile.TestExperimentersSetterRoundtrip) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestInvalidTimes) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_children (tests.integration.hdf5.test_nwbfile.TestNWBFileHDF5IO) > Test that the TimeSeries and processing module are children of their > respective parents ... ok > test_read (tests.integration.hdf5.test_nwbfile.TestNWBFileHDF5IO) > Test reading the NWBFile using HDF5IO ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:256: > DtypeConversionWarning: Spec 'TimeSeries/timestamps': Value with data type > int64 is being converted to data type float64 as specified. > warnings.warn(full_warning_msg, DtypeConversionWarning) > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(msg, MissingRequiredBuildWarning) > ok > test_write (tests.integration.hdf5.test_nwbfile.TestNWBFileHDF5IO) > Test writing the NWBFile using HDF5IO ... ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestNWBFileIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip > (tests.integration.hdf5.test_nwbfile.TestPublicationsConstructorRoundtrip) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip > (tests.integration.hdf5.test_nwbfile.TestPublicationsSetterRoundtrip) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestSubjectIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestTrials) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_nwbfile.TestUnits) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_roundtrip (tests.integration.hdf5.test_ogen.TestOptogeneticSeriesIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip > (tests.integration.hdf5.test_ogen.TestOptogeneticStimulusSiteIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ophys.MaskIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ophys.TestImageMaskIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ophys.TestImagingPlaneIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ophys.TestPixelMaskIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ophys.TestPlaneSegmentationIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ophys.TestRoiResponseSeriesIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_ophys.TestTwoPhotonSeriesIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... ok > test_roundtrip (tests.integration.hdf5.test_scratch.TestScratchDataIO) > Test whether the test Container read from file has the same contents as the > original test Container and ... > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/pynwb/testing/testh5io.py:94: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(w.message, w.category) > ok > test_scratch_container > (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(msg, MissingRequiredBuildWarning) > ok > test_scratch_container_with_name > (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok > test_scratch_container_with_notes > (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok > test_scratch_convert_DataFrame > (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok > test_scratch_convert_DataFrame_table_desc > (tests.integration.hdf5.test_scratch.TestScratchDataIO) > Test round trip convert of DataFrame with a table description ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(msg, MissingRequiredBuildWarning) > ok > test_scratch_convert_list > (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok > test_scratch_convert_ndarray > (tests.integration.hdf5.test_scratch.TestScratchDataIO) ... ok > test_append (tests.integration.test_io.TestAppend) ... ok > test_gzip_timestamps (tests.integration.test_io.TestH5DataIO) ... ok > test_write_dataset_custom_chunks (tests.integration.test_io.TestH5DataIO) ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:256: > DtypeConversionWarning: Spec 'TimeSeries/timestamps': Value with data type > int64 is being converted to data type float64 as specified. > warnings.warn(full_warning_msg, DtypeConversionWarning) > ok > test_write_dataset_custom_compress (tests.integration.test_io.TestH5DataIO) > ... ok > test_write_dataset_custom_fillvalue (tests.integration.test_io.TestH5DataIO) > ... ok > test_write_dataset_datachunkiterator_data_and_time > (tests.integration.test_io.TestH5DataIO) ... ok > test_write_dataset_datachunkiterator_data_only > (tests.integration.test_io.TestH5DataIO) ... ok > test_write_dataset_datachunkiterator_with_compression > (tests.integration.test_io.TestH5DataIO) ... ok > test_nwbio (tests.integration.test_io.TestHDF5Writer) ... ok > test_write_cache_spec (tests.integration.test_io.TestHDF5Writer) > Round-trip test for writing spec and reading it back in ... ok > test_write_clobber (tests.integration.test_io.TestHDF5Writer) ... ok > test_write_no_cache_spec (tests.integration.test_io.TestHDF5Writer) > Round-trip test for not writing spec ... ok > test_nwbio (tests.integration.test_io.TestHDF5WriterWithInjectedFile) ... ok > test_write_cache_spec > (tests.integration.test_io.TestHDF5WriterWithInjectedFile) > Round-trip test for writing spec and reading it back in ... ok > test_write_clobber (tests.integration.test_io.TestHDF5WriterWithInjectedFile) > ... ok > test_constructor (tests.unit.test_MultiContainerInterface.MCITests) ... ok > test_image (tests.unit.test_base.TestImage) ... ok > test_images (tests.unit.test_base.TestImages) ... ok > test_add_data_interface (tests.unit.test_base.TestProcessingModule) ... ok > test_deprecated_add_container (tests.unit.test_base.TestProcessingModule) ... > ok > test_deprecated_add_data_interface > (tests.unit.test_base.TestProcessingModule) ... ok > test_deprecated_get_container (tests.unit.test_base.TestProcessingModule) ... > ok > test_deprecated_get_data_interface > (tests.unit.test_base.TestProcessingModule) ... ok > test_get_data_interface (tests.unit.test_base.TestProcessingModule) ... ok > test_getitem (tests.unit.test_base.TestProcessingModule) ... ok > test_init (tests.unit.test_base.TestProcessingModule) ... ok > test_conflicting_time_args (tests.unit.test_base.TestTimeSeries) ... ok > test_data_timeseries (tests.unit.test_base.TestTimeSeries) ... ok > test_dataio_dci_data (tests.unit.test_base.TestTimeSeries) ... ok > test_dataio_list_data (tests.unit.test_base.TestTimeSeries) ... ok > test_dci_data (tests.unit.test_base.TestTimeSeries) ... ok > test_dci_data_arr (tests.unit.test_base.TestTimeSeries) ... ok > test_init_data (tests.unit.test_base.TestTimeSeries) ... ok > test_init_datalink_set (tests.unit.test_base.TestTimeSeries) ... ok > test_init_no_parent (tests.unit.test_base.TestTimeSeries) ... ok > test_init_rate (tests.unit.test_base.TestTimeSeries) ... ok > test_init_timestamps (tests.unit.test_base.TestTimeSeries) ... ok > test_init_timestampslink_set (tests.unit.test_base.TestTimeSeries) ... ok > test_no_starting_time (tests.unit.test_base.TestTimeSeries) ... ok > test_no_time (tests.unit.test_base.TestTimeSeries) ... ok > test_nodata (tests.unit.test_base.TestTimeSeries) ... ok > test_timestamps_timeseries (tests.unit.test_base.TestTimeSeries) ... ok > test_init (tests.unit.test_behavior.BehavioralEpochsConstructor) ... ok > test_init (tests.unit.test_behavior.BehavioralEventsConstructor) ... ok > test_init (tests.unit.test_behavior.BehavioralTimeSeriesConstructor) ... ok > test_init (tests.unit.test_behavior.CompassDirectionConstructor) ... ok > test_init (tests.unit.test_behavior.EyeTrackingConstructor) ... ok > test_init (tests.unit.test_behavior.PositionConstructor) ... ok > test_init (tests.unit.test_behavior.PupilTrackingConstructor) ... ok > test_init (tests.unit.test_behavior.SpatialSeriesConstructor) ... ok > test_available_namespaces (tests.unit.test_core.TestAvailableNamespaces) ... > ok > test_add_default (tests.unit.test_core.TestLabelledDict) ... ok > test_add_nondefault (tests.unit.test_core.TestLabelledDict) ... ok > test_constructor (tests.unit.test_core.TestNWBContainer) > Test constructor ... ok > test_nwbfields (tests.unit.test_core.TestNWBContainer) > Test that getters and setters work for nwbfields ... ok > test_print_file (tests.unit.test_core.TestPrint) ... ok > test_constructor (tests.unit.test_core_NWBContainer.TestNWBContainer) > Test constructor ... ok > test_nwbfields (tests.unit.test_core_NWBContainer.TestNWBContainer) > Test that getters and setters work for nwbfields ... ok > test_init (tests.unit.test_device.DeviceConstructorBoth) ... ok > test_init (tests.unit.test_ecephys.ClusterWaveformsConstructor) ... ok > test_init (tests.unit.test_ecephys.ClusteringConstructor) ... ok > test_init (tests.unit.test_ecephys.ElectricalSeriesConstructor) ... ok > test_invalid_data_shape (tests.unit.test_ecephys.ElectricalSeriesConstructor) > ... ok > test_link (tests.unit.test_ecephys.ElectricalSeriesConstructor) ... ok > test_init (tests.unit.test_ecephys.ElectrodeGroupConstructor) ... ok > test_init (tests.unit.test_ecephys.EventDetectionConstructor) ... ok > test_init (tests.unit.test_ecephys.EventWaveformConstructor) ... ok > test_init (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok > test_invalid_init_mismatched_description > (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok > test_invalid_init_mismatched_description2 > (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok > test_invalid_init_mismatched_electrodes > (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok > test_invalid_init_mismatched_event_times > (tests.unit.test_ecephys.FeatureExtractionConstructor) ... ok > test_add_electrical_series (tests.unit.test_ecephys.FilteredEphysTest) ... ok > test_init (tests.unit.test_ecephys.FilteredEphysTest) ... ok > test_add_electrical_series (tests.unit.test_ecephys.LFPTest) ... ok > test_init (tests.unit.test_ecephys.SpikeEventSeriesConstructor) ... ok > test_no_rate (tests.unit.test_ecephys.SpikeEventSeriesConstructor) ... ok > test_dataframe_roundtrip (tests.unit.test_epoch.TimeIntervalsTest) ... ok > test_dataframe_roundtrip_drop_ts (tests.unit.test_epoch.TimeIntervalsTest) > ... ok > test_from_dataframe (tests.unit.test_epoch.TimeIntervalsTest) ... ok > test_from_dataframe_missing_required_cols > (tests.unit.test_epoch.TimeIntervalsTest) ... ok > test_frorm_dataframe_missing_supplied_col > (tests.unit.test_epoch.TimeIntervalsTest) ... ok > test_init (tests.unit.test_epoch.TimeIntervalsTest) ... ok > test_no_tags (tests.unit.test_epoch.TimeIntervalsTest) ... ok > test_catch_dup_name (tests.unit.test_extension.TestCatchDupNS) ... FAIL > test_catch_duplicate_spec (tests.unit.test_extension.TestCatchDuplicateSpec) > ... ok > test_export (tests.unit.test_extension.TestExtension) ... ok > test_get_class (tests.unit.test_extension.TestExtension) ... ok > test_lab_meta (tests.unit.test_extension.TestExtension) ... ok > test_lab_meta_auto (tests.unit.test_extension.TestExtension) ... ok > test_load_namespace (tests.unit.test_extension.TestExtension) ... ok > test_load_namespace_with_reftype_attribute > (tests.unit.test_extension.TestExtension) ... ok > test_load_namespace_with_reftype_attribute_check_autoclass_const > (tests.unit.test_extension.TestExtension) ... ok > test_access_group_after_io (tests.unit.test_file.NWBFileTest) > Motivated by #739 ... ok > test_access_processing (tests.unit.test_file.NWBFileTest) ... ok > test_add_acquisition (tests.unit.test_file.NWBFileTest) ... ok > test_add_acquisition_check_dups (tests.unit.test_file.NWBFileTest) ... ok > test_add_acquisition_invalid_name (tests.unit.test_file.NWBFileTest) ... ok > test_add_analysis (tests.unit.test_file.NWBFileTest) ... ok > test_add_electrode (tests.unit.test_file.NWBFileTest) ... ok > test_add_invalid_time_interval (tests.unit.test_file.NWBFileTest) ... ok > test_add_invalid_time_w_ts (tests.unit.test_file.NWBFileTest) ... ok > test_add_invalid_times_column (tests.unit.test_file.NWBFileTest) ... ok > test_add_stimulus (tests.unit.test_file.NWBFileTest) ... ok > test_add_stimulus_template (tests.unit.test_file.NWBFileTest) ... ok > test_add_trial (tests.unit.test_file.NWBFileTest) ... ok > test_add_trial_column (tests.unit.test_file.NWBFileTest) ... ok > test_add_unit (tests.unit.test_file.NWBFileTest) ... ok > test_add_unit_column (tests.unit.test_file.NWBFileTest) ... ok > test_all_children (tests.unit.test_file.NWBFileTest) ... ok > test_constructor (tests.unit.test_file.NWBFileTest) ... ok > test_copy (tests.unit.test_file.NWBFileTest) ... ok > test_create_custom_intervals (tests.unit.test_file.NWBFileTest) ... ok > test_create_electrode_group (tests.unit.test_file.NWBFileTest) ... ok > test_create_electrode_group_invalid_index (tests.unit.test_file.NWBFileTest) > Test the case where the user creates an electrode table region with ... ok > test_epoch_tags (tests.unit.test_file.NWBFileTest) ... ok > test_fail_if_source_script_file_name_without_source_script > (tests.unit.test_file.NWBFileTest) ... ok > test_get_acquisition_empty (tests.unit.test_file.NWBFileTest) ... ok > test_get_acquisition_multiple_elements (tests.unit.test_file.NWBFileTest) ... > ok > test_get_neurodata_type (tests.unit.test_file.NWBFileTest) ... ok > test_multi_experimenters (tests.unit.test_file.NWBFileTest) ... ok > test_multi_publications (tests.unit.test_file.NWBFileTest) ... ok > test_print_units (tests.unit.test_file.NWBFileTest) ... ok > test_set_electrode_table (tests.unit.test_file.NWBFileTest) ... ok > test_constructor (tests.unit.test_file.SubjectTest) ... ok > test_nwbfile_constructor (tests.unit.test_file.SubjectTest) ... ok > test_simple (tests.unit.test_file.TestCacheSpec) ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(msg, MissingRequiredBuildWarning) > FAIL > test_simple (tests.unit.test_file.TestNoCacheSpec) ... > /usr/lib/python3/dist-packages/hdmf/build/objectmapper.py:653: > MissingRequiredBuildWarning: NWBFile 'root' is missing required value for > attribute 'devices'. > warnings.warn(msg, MissingRequiredBuildWarning) > ok > test_reftime_tzaware (tests.unit.test_file.TestTimestampsRefAware) ... ok > test_reftime_default (tests.unit.test_file.TestTimestampsRefDefault) ... ok > test_init (tests.unit.test_icephys.CurrentClampSeriesConstructor) ... ok > test_init (tests.unit.test_icephys.CurrentClampStimulusSeriesConstructor) ... > ok > test_init (tests.unit.test_icephys.IZeroClampSeriesConstructor) ... ok > test_constructor (tests.unit.test_icephys.IntracellularElectrodeConstructor) > ... ok > test_default (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok > test_sweepNumber_large_and_valid > (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok > test_sweepNumber_throws_with_Float > (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok > test_sweepNumber_throws_with_NaN > (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok > test_sweepNumber_throws_with_negative > (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok > test_sweepNumber_valid (tests.unit.test_icephys.PatchClampSeriesConstructor) > ... ok > test_sweepNumber_valid_np > (tests.unit.test_icephys.PatchClampSeriesConstructor) ... ok > test_init (tests.unit.test_icephys.VoltageClampSeriesConstructor) ... ok > test_init (tests.unit.test_icephys.VoltageClampStimulusSeriesConstructor) ... > ok > test_init (tests.unit.test_image.ImageMaskSeriesConstructor) ... ok > test_init (tests.unit.test_image.ImageSeriesConstructor) ... ok > test_init (tests.unit.test_image.IndexSeriesConstructor) ... ok > test_init (tests.unit.test_image.OpticalSeriesConstructor) ... ok > test_grayscale_image (tests.unit.test_image.TestImageSubtypes) ... ok > test_rgb_image (tests.unit.test_image.TestImageSubtypes) ... ok > test_rgba_image (tests.unit.test_image.TestImageSubtypes) ... ok > test_init (tests.unit.test_misc.AbstractFeatureSeriesConstructor) ... ok > test_init (tests.unit.test_misc.AnnotationSeriesConstructor) ... ok > test_init (tests.unit.test_misc.DecompositionSeriesConstructor) ... ok > test_init_delayed_bands (tests.unit.test_misc.DecompositionSeriesConstructor) > ... ok > test_add_interval (tests.unit.test_misc.IntervalSeriesConstructor) ... ok > test_init (tests.unit.test_misc.IntervalSeriesConstructor) ... ok > test_add_spike_times (tests.unit.test_misc.UnitsTests) ... ok > test_electrode_group (tests.unit.test_misc.UnitsTests) ... ok > test_get_obs_intervals (tests.unit.test_misc.UnitsTests) ... ok > test_get_spike_times (tests.unit.test_misc.UnitsTests) ... ok > test_get_spike_times_interval (tests.unit.test_misc.UnitsTests) ... ok > test_get_spike_times_multi (tests.unit.test_misc.UnitsTests) ... ok > test_get_spike_times_multi_interval (tests.unit.test_misc.UnitsTests) ... ok > test_init (tests.unit.test_misc.UnitsTests) ... ok > test_obs_intervals (tests.unit.test_misc.UnitsTests) ... ok > test_times (tests.unit.test_misc.UnitsTests) ... ok > test_times_and_intervals (tests.unit.test_misc.UnitsTests) ... ok > test_init (tests.unit.test_ogen.OptogeneticSeriesConstructor) ... ok > test_init (tests.unit.test_ophys.CorrectedImageStackConstructor) ... ok > test_init (tests.unit.test_ophys.DfOverFConstructor) ... ok > test_init (tests.unit.test_ophys.FluorescenceConstructor) ... ok > test_init (tests.unit.test_ophys.ImageSegmentationConstructor) ... ok > test_init (tests.unit.test_ophys.MotionCorrectionConstructor) ... ok > test_conversion_of_2d_image_mask_to_pixel_mask > (tests.unit.test_ophys.PlaneSegmentationConstructor) ... ok > test_conversion_of_2d_pixel_mask_to_image_mask > (tests.unit.test_ophys.PlaneSegmentationConstructor) ... ok > test_init (tests.unit.test_ophys.PlaneSegmentationConstructor) ... ok > test_init_3d_image_mask (tests.unit.test_ophys.PlaneSegmentationConstructor) > ... ok > test_init_image_mask (tests.unit.test_ophys.PlaneSegmentationConstructor) ... > ok > test_init_pixel_mask (tests.unit.test_ophys.PlaneSegmentationConstructor) ... > ok > test_init_voxel_mask (tests.unit.test_ophys.PlaneSegmentationConstructor) ... > ok > test_init (tests.unit.test_ophys.RoiResponseSeriesConstructor) ... ok > test_args (tests.unit.test_ophys.TwoPhotonSeriesConstructor) ... ok > test_init (tests.unit.test_ophys.TwoPhotonSeriesConstructor) ... ok > test_init (tests.unit.test_retinotopy.ImageRetinotopyConstructor) ... ok > test_constructor (tests.unit.test_spec.NWBNamespaceTest) ... ok > test_constructor (tests.unit.test_spec.NWBRefSpecTests) ... ok > test_wrong_reference_type (tests.unit.test_spec.NWBRefSpecTests) ... ok > > ====================================================================== > FAIL: test_catch_dup_name (tests.unit.test_extension.TestCatchDupNS) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/unit/test_extension.py", > line 172, in test_catch_dup_name > type_map.load_namespaces(os.path.join(self.tempdir, self.ns_path2)) > AssertionError: UserWarning not triggered > > ====================================================================== > FAIL: test_simple (tests.unit.test_file.TestCacheSpec) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build/tests/unit/test_file.py", > line 421, in test_simple > nwbfile = reader.read() > AssertionError: UserWarning not triggered > > ---------------------------------------------------------------------- > Ran 259 tests in 28.534s > > FAILED (failures=2) > E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_pynwb/build; python3.9 -m unittest > discover -v > dh_auto_test: error: pybuild --test -i python{version} -p 3.9 returned exit > code 13 The full build log is available from: http://qa-logs.debian.net/2020/12/26/pynwb_1.2.1-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with me so that we can identify if something relevant changed in the meantime. About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.