Package: lumpy-sv
Version: 0.3.1+dfsg-4
Severity: important
X-Debbugs-Cc: deb...@knowledgesynthesis.com
Dear Maintainer,
I built a lumpy-sv Docker image with the attached Dockerfile. Running a
container for the image produces the following error:
Sourcing executables from /etc/lumpy-sv/lumpyexpress.config ...
Checking for required python modules (/usr/bin/python3)...
Traceback (most recent call last):
File "<string>", line 1, in <module>
AttributeError: module 'importlib' has no attribute 'util'
Thanks,
Ken
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 4.19.0-13-amd64 (SMP w/4 CPU threads)
Kernel taint flags: TAINT_WARN
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: unable to detect
Versions of packages lumpy-sv depends on:
ii bamkit 0.0.1+git20170413.ccd079d-2
ii libbamtools2.5.1 2.5.1+dfsg-7+b1
ii libc6 2.31-9
ii libgcc-s1 10.2.1-3
ii libgzstream0 1.5+dfsg-5
ii libhts3 1.11-4
ii libstdc++6 10.2.1-3
ii python3 3.9.1-1
ii python3-numpy 1:1.19.4-1+b1
ii python3-pysam 0.15.4+ds-3+b2
ii samblaster 0.1.26-1
ii samtools 1.11-1
Versions of packages lumpy-sv recommends:
pn sambamba <none>
lumpy-sv suggests no packages.
-- no debconf information
FROM debian:bullseye-slim
RUN apt-get update && \
apt-get -y --no-install-recommends full-upgrade && \
apt-get -y --no-install-recommends install \
lumpy-sv \
&& \
rm -rf /var/lib/apt/lists/*
RUN useradd -ms /bin/bash lumpy
USER lumpy
WORKDIR /home/lumpy
CMD ["lumpyexpress"]
