Source: r-cran-raster, r-cran-satellite Control: found -1 r-cran-raster/3.5-2-1 Control: found -1 r-cran-satellite/1.0.4-1 Severity: serious Tags: sid bookworm X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: breaks needs-update
Dear maintainer(s),With a recent upload of r-cran-raster the autopkgtest of r-cran-satellite fails in testing when that autopkgtest is run with the binary packages of r-cran-raster from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
r-cran-raster from testing 3.5-2-1
r-cran-satellite from testing 1.0.4-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of r-cran-raster to
testing [1]. Due to the nature of this issue, I filed this bug report
against both packages. Can you please investigate the situation and
reassign the bug to the right package?
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=r-cran-raster https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-satellite/16823806/log.gz BEGIN TEST testthat.R R version 4.1.2 (2021-11-01) -- "Bird Hippie" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R.
library(testthat) library(satellite)
Loading required package: raster Loading required package: spcode for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?) code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
Warning messages:1: multiple methods tables found for 'crop' 2: multiple methods tables found for 'extend' > > > ### functions to create test data sets -----
### Utility functions to quickly create test data sets for various sensors
### Florian Detsch, last modified on 2017-07-24
tst_obj <- function(type = c("LC08", "LC8", "LE07", "LE7", "LT05")) {
+ if (type[1] == "LC08")
+ tst_obj_lc08()
+ else if (type[1] == "LC8")
+ tst_obj_lc8()
+ else if (type[1] == "LE07")
+ tst_obj_le07()
+ else if (type[1] == "LE7")
+ tst_obj_le7()
+ else if (type[1] == "LT05")
+ tst_obj_lt05()
+ else + stop("Sensor test data not available, yet.\n")
+ }
### collection 1 level-1 -----
## landsat 8
tst_obj_lc08 <- function() {
+ path <- system.file("extdata", package = "satellite")
+ files <- list.files(path, pattern = glob2rx("LC08*.TIF"), full.names
= TRUE)
+ satellite(files) + }
## landsat 7
tst_obj_le07 <- function() {
+ path <- system.file("extdata", package = "satellite")
+ files <- list.files(path, pattern = glob2rx("LE07*.TIF"), full.names
= TRUE)
+ satellite(files) + }
## landsat 5
tst_obj_lt05 <- function() {
+ path <- system.file("testdata/LT05", package = "satellite")
+ files <- list.files(path, pattern = glob2rx("LT05*.TIF"), full.names
= TRUE)
+ satellite(files) + }
### precollection level-1 -----
## landsat 8
tst_obj_lc8 <- function() {
+ path <- system.file("testdata/LC8", package = "satellite")
+ files <- list.files(path, pattern = glob2rx("LC8*.TIF"), full.names
= TRUE)
+ satellite(files) + }
## landsat 7
tst_obj_le7 <- function() {
+ path <- system.file("testdata/LE7", package = "satellite")
+ files <- list.files(path, pattern = glob2rx("LE7*.TIF"), full.names
= TRUE)
+ satellite(files) + }
### perform tests -----
test_check("satellite")
* empty test (12)== Failed tests ================================================================ -- Error (test-extend.R:9:1): (code run outside of `test_that()`) --------------
Error in `(function (classes, fdef, mtable) {
methods <- .findInheritedMethods(classes, fdef, mtable)
if (length(methods) == 1L) return(methods[[1L]])
else if (length(methods) == 0L) {
cnames <- paste0("\"", vapply(classes, as.character,
""), "\"", collapse = ", ")
stop(gettextf("unable to find an inherited method for function
%s for signature %s", sQuote(fdef@generic), sQuote(cnames)),
domain = NA)
}
else stop("Internal error in finding inherited methods; didn't
return a unique method", domain = NA)
})(list(structure("Satellite", package = "satellite")),
new("standardGeneric", .Data = function (x, y, ...)
standardGeneric("extend"), generic = structure("extend", package =
"terra"), package = "terra", group = list(), valueClass =
character(0), signature = c("x", "y"), default = NULL, skeleton =
(function (x, y, ...) stop("invalid call in method dispatch
to 'extend' (no default method)", domain = NA))(x, y, ...)),
<environment>)`: unable to find an inherited method for function
'extend' for signature '"Satellite"'
Backtrace:
x
1. \-terra::extend(sat, ext_ggs) test-extend.R:9:0
2. \-(function (classes, fdef, mtable) ...
[ FAIL 1 | WARN 0 | SKIP 12 | PASS 139 ]
Error: Test failures
Execution halted
autopkgtest [20:13:13]: test run-unit-test
OpenPGP_signature
Description: OpenPGP digital signature
