I collected some information that might help with debugging, unfortunately some 
output uses 
German localization, I can translate these if needed:

In the shell where I started akonadi with akonadictl start, I got this output 
(many
lines duplicated and removed for brevity):

"Das Objekt existiert nicht am Pfad 
»/org/freedesktop/NetworkManager/ActiveConnection/2«"
[...]
org.kde.pim.kimap: Connection to server lost  QAbstractSocket::HostNotFoundError
[...]
QIODevice::write (QSslSocket): device not open
org.kde.pim.kimap: Connection to server lost  QAbstractSocket::NetworkError
org.kde.pim.kimap: Connection to server lost  QAbstractSocket::NetworkError
org.kde.pim.kimap: Connection to server lost  QAbstractSocket::HostNotFoundError
org.kde.pim.kimap: Connection to server lost  QAbstractSocket::HostNotFoundError
[...]
"Das Objekt existiert nicht am Pfad 
»/org/freedesktop/NetworkManager/ActiveConnection/2«"
[...]
QIODevice::write (QSslSocket): device not open
org.kde.pim.kimap: Connection to server lost  
QAbstractSocket::RemoteHostClosedError
org.kde.pim.kimap: Connection to server lost  QAbstractSocket::NetworkError
[...]
"Das Objekt existiert nicht am Pfad 
»/org/freedesktop/NetworkManager/ActiveConnection/2«"
[...]
QIODevice::write (QSslSocket): device not open
"Das Objekt existiert nicht am Pfad 
»/org/freedesktop/NetworkManager/ActiveConnection/2«"
[...]
QIODevice::write (QSslSocket): device not open
org.kde.pim.akonadiserver.search: Executing search 
"kontact-2268689595-SearchSession"
org.kde.pim.akonadiserver.search: Search  "kontact-2268689595-SearchSession" 
done 
(without remote search)
org.kde.pim.akonadiserver.search: Executing search 
"kontact-2268689595-SearchSession"
org.kde.pim.akonadiserver.search: Search  "kontact-2268689595-SearchSession" 
done 
(without remote search)
org.kde.pim.akonadiserver.search: Executing search 
"kontact-2268689595-SearchSession"
[...]
org.kde.pim.akonadiserver: QueryBuilder::exec(): database reported transaction 
timeout, 
retrying transaction
org.kde.pim.akonadiserver: "Lock wait timeout exceeded; try restarting 
transaction QMYSQL3: 
Der Befehl konnte nicht ausgeführt werden"
org.kde.pim.akonadiserver: QueryBuilder::exec(): database reported transaction 
timeout, 
retrying transaction
org.kde.pim.akonadiserver: "Lock wait timeout exceeded; try restarting 
transaction QMYSQL3: 
Der Befehl konnte nicht ausgeführt werden"


stracing akonadiserver shows this for example:

[pid 110942] write(10, "\1\0\0\0\0\0\0\0", 8) = 8
[pid 110942] poll([{fd=10, events=POLLIN}, {fd=26, events=POLLIN}, {fd=28, 
events=POLLIN}, 
{fd=36, events=POLLIN}, {fd=38, events=POLLIN}, {fd=42, events=POLLIN}, {fd=47, 
events=POLLIN}, {fd=52, events=POLLIN}, {fd=61, events=POLLIN}, {fd=69, 
events=POLLIN}, 
{fd=76, events=POLLIN}, {fd=77, events=POLLIN}, {fd=79, events=POLLIN}, {fd=86, 
events=POLLIN}, {fd=89, events=POLLIN}, {fd=90, events=POLLIN}, {fd=95, 
events=POLLIN}, 
{fd=96, events=POLLIN}, {fd=99, events=POLLIN}, {fd=100, events=POLLIN}, 
{fd=110, 
events=POLLIN}, {fd=114, events=POLLIN}, {fd=116, events=POLLIN}, {fd=121, 
events=POLLIN}, {fd=122, events=POLLIN}, {fd=125, events=POLLIN}, {fd=126, 
events=POLLIN}, {fd=129, events=POLLIN}, {fd=132, events=POLLIN}, {fd=136, 
events=POLLIN}, {fd=142, events=POLLIN}, {fd=146, events=POLLIN}, ...], 46, 48) 
= 1 
([{fd=10, revents=POLLIN}])
[pid 110942] read(10, "\2\0\0\0\0\0\0\0", 16) = 8
[pid 110942] poll([{fd=10, events=POLLIN}, {fd=26, events=POLLIN}, {fd=28, 
events=POLLIN}, 
{fd=36, events=POLLIN}, {fd=38, events=POLLIN}, {fd=42, events=POLLIN}, {fd=47, 
events=POLLIN}, {fd=52, events=POLLIN}, {fd=61, events=POLLIN}, {fd=69, 
events=POLLIN}, 
{fd=76, events=POLLIN}, {fd=77, events=POLLIN}, {fd=79, events=POLLIN}, {fd=86, 
events=POLLIN}, {fd=89, events=POLLIN}, {fd=90, events=POLLIN}, {fd=95, 
events=POLLIN}, 
{fd=96, events=POLLIN}, {fd=99, events=POLLIN}, {fd=100, events=POLLIN}, 
{fd=110, 
events=POLLIN}, {fd=114, events=POLLIN}, {fd=116, events=POLLIN}, {fd=121, 
events=POLLIN}, {fd=122, events=POLLIN}, {fd=125, events=POLLIN}, {fd=126, 
events=POLLIN}, {fd=129, events=POLLIN}, {fd=132, events=POLLIN}, {fd=136, 
events=POLLIN}, {fd=142, events=POLLIN}, {fd=146, events=POLLIN}, ...], 46, 47) 
= 0 
(Timeout)

[...]

[pid 110942] read(89, 
"\3\0\0\0\0\0\0\0u\0\20\0\0\377\377\377\377\377\377\377\377\0\0\0\0\1\0\0\0\25\0\0"...,
 70) = 
70
[pid 110942] write(10, "\1\0\0\0\0\0\0\0", 8) = 8
[pid 110942] ppoll([{fd=89, events=POLLIN|POLLOUT}], 1, {tv_sec=30, tv_nsec=0}, 
NULL, 8) = 
1 ([{fd=89, revents=POLLOUT}], left {tv_sec=29, tv_nsec=999996833})
[pid 110942] write(89, "\3\0\0\0\0\0\0\0\365\0\0\0\0\377\377\377\377", 17) = 17
[pid 110942] write(10, "\1\0\0\0\0\0\0\0", 8) = 8
[pid 110942] poll([{fd=10, events=POLLIN}, {fd=26, events=POLLIN}, {fd=28, 
events=POLLIN}, 
{fd=36, events=POLLIN}, {fd=38, events=POLLIN}, {fd=42, events=POLLIN}, {fd=47, 
events=POLLIN}, {fd=52, events=POLLIN}, {fd=61, events=POLLIN}, {fd=69, 
events=POLLIN}, 
{fd=76, events=POLLIN}, {fd=77, events=POLLIN}, {fd=79, events=POLLIN}, {fd=86, 
events=POLLIN}, {fd=89, events=POLLIN}, {fd=90, events=POLLIN}, {fd=95, 
events=POLLIN}, 
{fd=96, events=POLLIN}, {fd=99, events=POLLIN}, {fd=100, events=POLLIN}, 
{fd=110, 
events=POLLIN}, {fd=114, events=POLLIN}, {fd=116, events=POLLIN}, {fd=121, 
events=POLLIN}, {fd=122, events=POLLIN}, {fd=125, events=POLLIN}, {fd=126, 
events=POLLIN}, {fd=129, events=POLLIN}, {fd=132, events=POLLIN}, {fd=136, 
events=POLLIN}, {fd=142, events=POLLIN}, {fd=146, events=POLLIN}, ...], 46, 51) 
= 1 
([{fd=10, revents=POLLIN}])
[pid 110942] read(10, "\2\0\0\0\0\0\0\0", 16) = 8
[pid 110942] poll([{fd=10, events=POLLIN}, {fd=26, events=POLLIN}, {fd=28, 
events=POLLIN}, 
{fd=36, events=POLLIN}, {fd=38, events=POLLIN}, {fd=42, events=POLLIN}, {fd=47, 
events=POLLIN}, {fd=52, events=POLLIN}, {fd=61, events=POLLIN}, {fd=69, 
events=POLLIN}, 
{fd=76, events=POLLIN}, {fd=77, events=POLLIN}, {fd=79, events=POLLIN}, {fd=86, 
events=POLLIN}, {fd=89, events=POLLIN}, {fd=90, events=POLLIN}, {fd=95, 
events=POLLIN}, 
{fd=96, events=POLLIN}, {fd=99, events=POLLIN}, {fd=100, events=POLLIN}, 
{fd=110, 
events=POLLIN}, {fd=114, events=POLLIN}, {fd=116, events=POLLIN}, {fd=121, 
events=POLLIN}, {fd=122, events=POLLIN}, {fd=125, events=POLLIN}, {fd=126, 
events=POLLIN}, {fd=129, events=POLLIN}, {fd=132, events=POLLIN}, {fd=136, 
events=POLLIN}, {fd=142, events=POLLIN}, {fd=146, events=POLLIN}, ...], 46, 50) 
= 0 
(Timeout)

[...]

[pid 110942] read(89, 
"\3\0\0\0\0\0\0\0u\0\20\0\0\377\377\377\377\377\377\377\377\0\0\0\0\1\0\0\0\25\0\0"...,
 70) = 
70
[pid 110942] write(10, "\1\0\0\0\0\0\0\0", 8) = 8
[pid 110942] ppoll([{fd=89, events=POLLIN|POLLOUT}], 1, {tv_sec=30, tv_nsec=0}, 
NULL, 8) = 
1 ([{fd=89, revents=POLLOUT}], left {tv_sec=29, tv_nsec=999996833})

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