Hi all, On Mon, 24 Oct 2022 13:08:31 +0530 Nilesh Patra <nil...@debian.org> wrote: > t-coffee is breaking python-biopython build. I ran the test in question w/ > gdb and I > observe a segfault from t_coffee's end. > > Starting program: /usr/bin/t_coffee -output clustalw_aln -infile Fasta/fa01 > -outfile Fasta/tc_out.aln -type protein -outorder input -gapopen -2 -gapext -5
Just completing the report with a more detailed backtrace for
ulterior reference, to help further debugging and reports:
(gdb) backtrace
#0 0x0000555555675e73 in seq2unique_name_seq (S=0x0) at
util_lib/aln_convertion_util.c:2091
#1 0x000055555574d656 in read_seq_in_n_list (fname=0x55555598cad0, n=1,
type=0x55555593dfb0 "", SeqMode=0x555555d45fb0 "ANY")
at util_lib/util_constraints_list.c:2533
#2 0x0000555555659491 in batch_main (argc=15, argv=0x555555944230) at
t_coffee_lib/t_coffee.c:4720
#3 0x000055555564f9a0 in main (argc=15, argv=0x7fffffffe128) at
t_coffee_lib/t_coffee.c:179
Have a nice day, :)
--
Étienne Mollier <emoll...@emlwks999.eu>
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Sent from /dev/pts/9, please excuse my verbosity.
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