after investigation, logol does not find anymore libswipl.so.8, need version providing .so.9
compiled program link to .so.x versions, forcing package recompilation Le mar. 13 déc. 2022 à 22:03, Paul Gevers <elb...@debian.org> a écrit : > Source: swi-prolog, logol > Control: found -1 swi-prolog/9.0.2+dfsg-1 > Control: found -1 logol/1.7.9+dfsg-5 > Severity: serious > Tags: sid bookworm > User: debian...@lists.debian.org > Usertags: breaks needs-update > > Dear maintainer(s), > > With a recent upload of swi-prolog the autopkgtest of logol fails in > testing when that autopkgtest is run with the binary packages of > swi-prolog from unstable. It passes when run with only packages from > testing. In tabular form: > > pass fail > swi-prolog from testing 9.0.2+dfsg-1 > logol from testing 1.7.9+dfsg-5 > all others from testing from testing > > I copied some of the output at the bottom of this report. The issue > *looks* similar to bug 1022253, but now on all architectures. > > Currently this regression is blocking the migration of swi-prolog to > testing [1]. Due to the nature of this issue, I filed this bug report > against both packages. Can you please investigate the situation and > reassign the bug to the right package? > > More information about this bug and the reason for filing it can be found > on > https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation > > Paul > > [1] https://qa.debian.org/excuses.php?package=swi-prolog > > > https://ci.debian.net/data/autopkgtest/testing/amd64/l/logol/29303003/log.gz > > calling logol with parameters -g 1799.logol -s 1799.fasta -dna > log4j:ERROR setFile(null,true) call failed. > java.io.FileNotFoundException: /var/log/logol/logol.log (Permission denied) > at java.base/java.io.FileOutputStream.open0(Native Method) > at java.base/java.io > .FileOutputStream.open(FileOutputStream.java:293) > at java.base/java.io > .FileOutputStream.<init>(FileOutputStream.java:235) > at java.base/java.io > .FileOutputStream.<init>(FileOutputStream.java:155) > at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) > at > org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) > at > org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) > at > > org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) > at > > org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) > at > > org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) > at > > org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) > at > > org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672) > at > > org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516) > at > > org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) > at > > org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) > at org.apache.log4j.LogManager.<clinit>(LogManager.java:127) > at org.apache.log4j.Logger.getLogger(Logger.java:117) > at org.irisa.genouest.logol.Logol.<clinit>(Unknown Source) > For help, use option -h > INFO org.irisa.genouest.logol.Logol - Using configuration file: > /usr/share/logol/prolog/logol.properties > INFO org.irisa.genouest.logol.Logol - option g called with 1799.logol > INFO org.irisa.genouest.logol.Logol - option s called with 1799.fasta > INFO org.irisa.genouest.logol.Logol - No maximum solutions defined, > using defaults > INFO org.irisa.genouest.logol.Logol - option dna called > INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar > analyser > Executing prolog for pre-analyse > java.io.FileNotFoundException: > /tmp/1799.logol.38da5a9d-c2ac-4a7d-8eb3-8c05b42f5c04.pre.res (No such > file or directory) > at java.base/java.io.FileInputStream.open0(Native Method) > at java.base/java.io > .FileInputStream.open(FileInputStream.java:216) > at java.base/java.io > .FileInputStream.<init>(FileInputStream.java:157) > at java.base/java.io.FileReader.<init>(FileReader.java:75) > at org.irisa.genouest.logol.Logol.loadVariables2Postpone(Unknown > Source) > at org.irisa.genouest.logol.Logol.generatePreAnalysis(Unknown > Source) > at org.irisa.genouest.logol.Logol.analyse(Unknown Source) > at org.irisa.genouest.logol.Logol.execute(Unknown Source) > at org.irisa.genouest.logol.Logol.main(Unknown Source) > INFO org.irisa.genouest.logol.Logol - Analyse in progress.. > WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search > tool is not set in system environment. Will try to execute directly but > may fail if not in PATH of current user > Exception in thread "main" org.irisa.genouest.logol.GrammarException: > ERROR: Coudld not execute program: Program exited with wrong status code > at org.irisa.genouest.logol.Logol.execute(Unknown Source) > at org.irisa.genouest.logol.Logol.main(Unknown Source) > ERROR org.irisa.genouest.logol.SequenceAnalyser - Program exited with > wrong status code: 127 > autopkgtest [02:15:33]: test run-unit-test > > -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
