Source: art-nextgen-simulation-tools Version: 20160605+dfsg-4 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package art-nextgen-simulation-tools > dpkg-buildpackage: info: source version 20160605+dfsg-4 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Nilesh Patra <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean > dh_auto_clean > make -j8 distclean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > test -z "art_illumina art_454 art_SOLiD" || rm -f art_illumina art_454 > art_SOLiD > rm -f *.o > rm -f *.tab.c > rm -f art_454_src/*.o > test -z "" || rm -f > rm -f art_SOLiD_src/*.o > test . = "." || test -z "" || rm -f > rm -f art_illumina_src/*.o > rm -f art_454_src/.deps/.dirstamp > rm -f config.h stamp-h1 > rm -f art_454_src/.dirstamp > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > rm -f art_SOLiD_src/.deps/.dirstamp > rm -f cscope.out cscope.in.out cscope.po.out cscope.files > rm -f art_SOLiD_src/.dirstamp > rm -f art_illumina_src/.deps/.dirstamp > rm -f art_illumina_src/.dirstamp > rm -f config.status config.cache config.log configure.lineno > config.status.lineno > rm -f art_454_src/.deps/art.Po > rm -f art_454_src/.deps/art_454.Po > rm -f art_454_src/.deps/readSeqFile.Po > rm -f art_454_src/.deps/read_profile.Po > rm -f art_454_src/.deps/samRead.Po > rm -f art_454_src/.deps/seqRead.Po > rm -f art_SOLiD_src/.deps/art.Po > rm -f art_SOLiD_src/.deps/art_SOLiD.Po > rm -f art_SOLiD_src/.deps/readSeqFile.Po > rm -f art_SOLiD_src/.deps/read_SOLiD.Po > rm -f art_SOLiD_src/.deps/samRead.Po > rm -f art_illumina_src/.deps/art_illumina.Po > rm -f art_illumina_src/.deps/art_qual_scale.Po > rm -f art_illumina_src/.deps/empdist.Po > rm -f art_illumina_src/.deps/readSeqFile.Po > rm -f art_illumina_src/.deps/samRead.Po > rm -f art_illumina_src/.deps/seqRead.Po > rm -f Makefile > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building art-nextgen-simulation-tools using existing > ./art-nextgen-simulation-tools_20160605+dfsg.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file config.h.in, use > --include-removal to override > dpkg-source: info: local changes detected, the modified files are: > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_5_end_com.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_5_end_com.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_5_end_com.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_5_end_com.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair_F3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair_F3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair_R3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_matepair_R3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_pair.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_pair.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_pair1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_pair1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_pair2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_pair2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_454.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_454.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_454.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_454.stat > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_4542.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_4542.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_F3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_F3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_F5.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_paired_F5.map > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_single.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_single.map > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_single.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_single_454.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_single_454.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_single_454.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/amp_single_454.stat > art-nextgen-simulation-tools-20160605+dfsg/examples/dat_userProfile.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/dat_userProfile.map > art-nextgen-simulation-tools-20160605+dfsg/examples/dat_userProfile.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_com.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_com.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_com1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_com1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_com2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_com2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_dat.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_dat_F3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_dat_F3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_dat_R3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_dat_R3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs1.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs1_F3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs1_F3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs1_R3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs1_R3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs2.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs2_F3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs2_F3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs2_R3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/matepair_fs2_R3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flx.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flx.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flx.stat > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flx1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flx1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flx2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flx2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flxTitan.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flxTitan.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flxTitan.stat > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flxTitan1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flxTitan1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flxTitan2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_454_flxTitan2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_dat.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_dat_F3.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_dat_F3.map > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_dat_F5.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_dat_F5.map > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f1.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f11.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f11.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f12.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f12.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f2.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f21.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f21.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f22.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_com_f22.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_sep.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_sep.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_sep1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_sep1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_sep2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_end_sep2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_nomask.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_nomask1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_nomask1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_nomask2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/paired_nomask2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_flx.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_flx.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_flx.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_flx.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_flx.stat > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t1.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t1.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t1.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t1.stat > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t2.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t2.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t2.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t2.stat > > art-nextgen-simulation-tools-20160605+dfsg/examples/single_454_t2_normalised.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/single_dat.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/single_dat.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/single_dat.map > art-nextgen-simulation-tools-20160605+dfsg/examples/single_dat.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/single_end_com.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/single_end_com.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/single_end_com.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/single_end_com.sam > art-nextgen-simulation-tools-20160605+dfsg/examples/single_end_sep.aln > art-nextgen-simulation-tools-20160605+dfsg/examples/single_end_sep.bed > art-nextgen-simulation-tools-20160605+dfsg/examples/single_end_sep.fq > art-nextgen-simulation-tools-20160605+dfsg/examples/single_end_sep.sam > dpkg-source: error: aborting due to unexpected upstream changes, see > /tmp/art-nextgen-simulation-tools_20160605+dfsg-4.diff.ZwTS1y > dpkg-source: info: Hint: make sure the version in debian/changelog matches > the unpacked source tree > dpkg-source: info: you can integrate the local changes with dpkg-source > --commit > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/art-nextgen-simulation-tools_20160605+dfsg-4_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
