Source: beast-mcmc Version: 1.10.4+dfsg-5 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > --------------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package beast-mcmc > dpkg-buildpackage: info: source version 1.10.4+dfsg-5 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andrius Merkys <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --with javahelper > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > rm -f native/*\.o native/*\.so native/*\.so\.* > ant clean > Buildfile: /<<PKGBUILDDIR>>/build.xml > > clean: > [delete] Deleting directory /<<PKGBUILDDIR>>/build > > BUILD SUCCESSFUL > Total time: 0 seconds > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > jh_clean > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building beast-mcmc using existing > ./beast-mcmc_1.10.4+dfsg.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/VERSION HISTORY.txt has no > final newline (either original or modified version) > dpkg-source: warning: executable mode 0755 of > 'release/Linux/BEASTv1.10.4/bin/beast' will not be represented in diff > dpkg-source: warning: executable mode 0755 of > 'release/Linux/BEASTv1.10.4/bin/beauti' will not be represented in diff > dpkg-source: warning: executable mode 0755 of > 'release/Linux/BEASTv1.10.4/bin/loganalyser' will not be represented in diff > dpkg-source: warning: executable mode 0755 of > 'release/Linux/BEASTv1.10.4/bin/logcombiner' will not be represented in diff > dpkg-source: warning: executable mode 0755 of > 'release/Linux/BEASTv1.10.4/bin/treeannotator' will not be represented in diff > dpkg-source: warning: executable mode 0755 of > 'release/Linux/BEASTv1.10.4/bin/treestat' will not be represented in diff > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/ContinuousTraits/DarwinsFinches.nex > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/Data/Primates_starting_tree.nex > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/DiscreteTraits/H5N1_HA.nex > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/DiscreteTraits/phylogeneticGLM/batRABV.fas > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/DiscreteTraits/phylogeneticGLM/hostDistances.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_k_unrest.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_zs.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/ecmdata/inirates.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/ecmdata/norates.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_k_unrest.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_zs.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/pcadata/freqs.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/pcadata/means.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/pcadata/scales.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/EmpiricalCodonModels/codon-data/pcadata/startfacs.csv > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testAlignmentStatistics.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testBinaryDollo.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testLatentLiability.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testLikelihood.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testMCMC.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testMSSD.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testMVOU.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testMarkovJumps.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testMixedModel.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testNormalModelEllipticalSliceSampler.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testPosteriorIBD.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testSequenceSimulator.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testSimplePathSampling.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testTruncatedNormal15dimension.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/TestXML/testUniformizedMarkovJumps.xml > has no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/examples/test.sh has no > final newline (either original or modified version) > dpkg-source: error: cannot represent change to > release/Linux/BEASTv1.10.4/images/beast.png: binary file contents changed > dpkg-source: error: add release/Linux/BEASTv1.10.4/images/beast.png in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > release/Linux/BEASTv1.10.4/images/beauti.png: binary file contents changed > dpkg-source: error: add release/Linux/BEASTv1.10.4/images/beauti.png in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > release/Linux/BEASTv1.10.4/images/utility.png: binary file contents changed > dpkg-source: error: add release/Linux/BEASTv1.10.4/images/utility.png in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > release/Linux/BEASTv1.10.4/lib/beast.jar: binary file contents changed > dpkg-source: error: add release/Linux/BEASTv1.10.4/lib/beast.jar in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > release/Linux/BEASTv1.10.4/lib/beauti.jar: binary file contents changed > dpkg-source: error: add release/Linux/BEASTv1.10.4/lib/beauti.jar in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/native/Makefile.OSX has no > final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/native/Makefile.amd64 has > no final newline (either original or modified version) > dpkg-source: warning: file > beast-mcmc-1.10.4+dfsg/release/Linux/BEASTv1.10.4/native/Makefile.ia64 has no > final newline (either original or modified version) > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/beast-mcmc_1.10.4+dfsg-5_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
