Source: rna-star Version: 2.7.10b+dfsg-2 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ------------------------------------------------------------------------------------------------------------------------------ > > dpkg-buildpackage: info: source package rna-star > dpkg-buildpackage: info: source version 2.7.10b+dfsg-2 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Michael R. Crusoe > <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --sourcedirectory=source > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > cd source && /usr/bin/make clean > make[2]: Entering directory '/<<PKGBUILDDIR>>/source' > 'rm' -f *.o opal/opal.o STAR STARstatic STARlong Depend.list > parametersDefault.xxd > make[2]: Leaving directory '/<<PKGBUILDDIR>>/source' > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean -O--sourcedirectory=source > dh_clean -O--sourcedirectory=source > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building rna-star using existing > ./rna-star_2.7.10b+dfsg.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: error: cannot represent change to source/STAR-avx: binary file > contents changed > dpkg-source: error: add source/STAR-avx in debian/source/include-binaries if > you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STAR-avx' will not be > represented in diff > dpkg-source: error: cannot represent change to source/STAR-avx2: binary file > contents changed > dpkg-source: error: add source/STAR-avx2 in debian/source/include-binaries if > you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STAR-avx2' will not be > represented in diff > dpkg-source: error: cannot represent change to source/STAR-plain: binary file > contents changed > dpkg-source: error: add source/STAR-plain in debian/source/include-binaries > if you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STAR-plain' will not be > represented in diff > dpkg-source: error: cannot represent change to source/STAR-sse3: binary file > contents changed > dpkg-source: error: add source/STAR-sse3 in debian/source/include-binaries if > you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STAR-sse3' will not be > represented in diff > dpkg-source: error: cannot represent change to source/STAR-sse4.1: binary > file contents changed > dpkg-source: error: add source/STAR-sse4.1 in debian/source/include-binaries > if you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STAR-sse4.1' will not > be represented in diff > dpkg-source: error: cannot represent change to source/STAR-ssse3: binary file > contents changed > dpkg-source: error: add source/STAR-ssse3 in debian/source/include-binaries > if you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STAR-ssse3' will not be > represented in diff > dpkg-source: error: cannot represent change to source/STARlong-avx: binary > file contents changed > dpkg-source: error: add source/STARlong-avx in debian/source/include-binaries > if you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STARlong-avx' will not > be represented in diff > dpkg-source: error: cannot represent change to source/STARlong-avx2: binary > file contents changed > dpkg-source: error: add source/STARlong-avx2 in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STARlong-avx2' will not > be represented in diff > dpkg-source: error: cannot represent change to source/STARlong-plain: binary > file contents changed > dpkg-source: error: add source/STARlong-plain in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STARlong-plain' will > not be represented in diff > dpkg-source: error: cannot represent change to source/STARlong-sse3: binary > file contents changed > dpkg-source: error: add source/STARlong-sse3 in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STARlong-sse3' will not > be represented in diff > dpkg-source: error: cannot represent change to source/STARlong-sse4.1: binary > file contents changed > dpkg-source: error: add source/STARlong-sse4.1 in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STARlong-sse4.1' will > not be represented in diff > dpkg-source: error: cannot represent change to source/STARlong-ssse3: binary > file contents changed > dpkg-source: error: add source/STARlong-ssse3 in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of 'source/STARlong-ssse3' will > not be represented in diff > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/rna-star_2.7.10b+dfsg-2_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
