Source: python-skbio Version: 0.5.8-4 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ------------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package python-skbio > dpkg-buildpackage: info: source version 0.5.8-4 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Michael R. Crusoe > <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --with python3,sphinxdoc --buildsystem=pybuild > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > if [ "`find . -name "*.pyo"`" = "" ] ; then echo no need to clean up ; else > dh_auto_clean; fi > no need to clean up > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean -O--buildsystem=pybuild > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_clean > find ./skbio -name '*.so' -delete > find ./skbio -name '*.o' -delete > rm -rf doc/build build doc/source/generated > find doc -name *.doctree -delete > rm -rf .pybuild > rm -f scikit_bio.egg-info/PKG-INFO scikit_bio.egg-info/SOURCES.txt > scikit_bio.egg-info/dependency_links.txt scikit_bio.egg-info/requires.txt > scikit_bio.egg-info/top_level.txt > rm -f skbio/alignment/_ssw_wrapper.c skbio/diversity/_phylogenetic.c > skbio/stats/__subsample.c skbio/metadata/_intersection.c > mv simde-sse2.h.orig simde-sse2.h || true > mv: cannot stat 'simde-sse2.h.orig': No such file or directory > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building python-skbio using existing > ./python-skbio_0.5.8.orig.tar.gz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file simde-sse2.h, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file > skbio/metadata/_intersection.c, use --include-removal to override > dpkg-source: warning: ignoring deletion of file > skbio/alignment/_ssw_wrapper.c, use --include-removal to override > dpkg-source: warning: ignoring deletion of file skbio/stats/__subsample.c, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file > skbio/diversity/_phylogenetic.c, use --include-removal to override > dpkg-source: info: local changes detected, the modified files are: > python-skbio-0.5.8/skbio/stats/distance/_cutils.c > python-skbio-0.5.8/skbio/stats/ordination/_cutils.c > dpkg-source: error: aborting due to unexpected upstream changes, see > /tmp/python-skbio_0.5.8-4.diff.QvA4ng > dpkg-source: info: Hint: make sure the version in debian/changelog matches > the unpacked source tree > dpkg-source: info: you can integrate the local changes with dpkg-source > --commit > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/python-skbio_0.5.8-4_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
