Source: unicycler Version: 0.5.0+dfsg-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ------------------------------------------------------------------------------------------------------------------------------ > > dpkg-buildpackage: info: source package unicycler > dpkg-buildpackage: info: source version 0.5.0+dfsg-1 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --with python3 --buildsystem=pybuild > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > find . -name __pycache__ -type d | xargs rm -rf > make distclean > make[2]: Entering directory '/<<PKGBUILDDIR>>' > Platform: Linux > Compiler: g++ 13.2.0 > rm -f unicycler/src/scoredalignment.o unicycler/src/minimap_align.o > unicycler/src/ref_seqs.o unicycler/src/random_alignments.o > unicycler/src/miniasm/asm.o unicycler/src/miniasm/sdict.o > unicycler/src/miniasm/dotter.o unicycler/src/miniasm/asg.o > unicycler/src/miniasm/sys.o unicycler/src/miniasm/paf.o > unicycler/src/miniasm/hit.o unicycler/src/consensus_align.o > unicycler/src/global_align.o unicycler/src/semi_global_align.o > unicycler/src/string_functions.o unicycler/src/miniasm_assembly.o > unicycler/src/start_end_align.o unicycler/src/path_align.o > unicycler/src/minimap/misc.o unicycler/src/minimap/map.o > unicycler/src/minimap/sdust.o unicycler/src/minimap/bseq.o > unicycler/src/minimap/sketch.o unicycler/src/minimap/kthread.o > unicycler/src/minimap/index.o unicycler/src/semi_global_align_exhaustive.o > unicycler/src/overlap_align.o unicycler/src/kmers.o > rm -f unicycler/cpp_functions.so > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean -O--buildsystem=pybuild > dh_clean -O--buildsystem=pybuild > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building unicycler using existing > ./unicycler_0.5.0+dfsg.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: newly created empty file > '.pybuild/cpython3_3.11_unicycler/build/unicycler/__init__.py' will not be > represented in diff > dpkg-source: error: cannot represent change to > .pybuild/cpython3_3.11_unicycler/build/unicycler/cpp_functions.so: binary > file contents changed > dpkg-source: error: add > .pybuild/cpython3_3.11_unicycler/build/unicycler/cpp_functions.so in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > '.pybuild/cpython3_3.11_unicycler/build/unicycler/cpp_functions.so' will not > be represented in diff > dpkg-source: warning: file > unicycler-0.5.0+dfsg/unicycler.egg-info/SOURCES.txt has no final newline > (either original or modified version) > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/unicycler_0.5.0+dfsg-1_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
