Source: sra-sdk Version: 3.0.3+dfsg-6 Severity: normal Tags: upstream Control: affects -1 + src:re2
The next RE2 transition is waiting for sra-sdk to support libre2-11 (re2 >= 20230601), available in experimental. Upstream, RE2 added a dependency on Abseil, changing its API a little. It looks like only sharq in sra-tools requires re2, and it currently expects 2021-09-01: https://github.com/ncbi/sra-tools/blob/6d1e74850ad399f671da13e8aee39bcef926e551/tools/loaders/sharq/CMakeLists.txt#L89 [ 78%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P CMakeFiles/ncbi -ngs-c++.dir/cmake_clean_target.cmake In file included from /<<PKGBUILDDIR>>/test/loaders/sharq/test-regexpr.cpp:30: /<<PKGBUILDDIR>>/test/loaders/sharq/../../../tools/loaders/sharq/regexpr.hpp: In member functi on ‘bool CRegExprMatcher::Matches(const std::string_view&)’: /<<PKGBUILDDIR>>/test/loaders/sharq/../../../tools/loaders/sharq/regexpr.hpp:56:40: error: cannot convert ‘const std::string_view’ {aka ‘const std::basic_string_view<char>’} to ‘absl::debian3::string_view’ 56 | return re2::RE2::PartialMatchN(input, *re, args.empty() ? nullptr : &args[0], (int)args.size()); | ^~~~~ | | | const std::string_view {aka const std::basic_string_view<char>} In file included from /<<PKGBUILDDIR>>/test/loaders/sharq/../../../tools/loaders/sharq/regexpr.hpp:13: /usr/include/re2/re2.h:343:47: note: initializing argument 1 of ‘static bool re2::RE2::PartialMatchN(absl::debian3::string_view, const re2::RE2&, const Arg* const*, int)’ 343 | static bool PartialMatchN(absl::string_view text, const RE2& re, | ~~~~~~~~~~~~~~~~~~^~~~ Stefano
sra-sdk_3.0.3+dfsg-6_amd64.build.xz
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