Source: r-cran-metamix Version: 0.3-2 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20240420 ftbfs-trixie ftbfs-t64-armhf
Hi, During a rebuild of all packages in sid, your package failed to build on armhf. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>/src' > make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' > installing to > /<<PKGBUILDDIR>>/debian/r-cran-metamix/usr/lib/R/site-library/00LOCK-r-cran-metamix-0.3/00new/metaMix/libs > ** R > ** data > *** moving datasets to lazyload DB > ** inst > ** byte-compile and prepare package for lazy loading > -------------------------------------------------------------------------- > Sorry! You were supposed to get help about: > pmix_init:startup:internal-failure > But I couldn't open the help file: > /usr/share/pmix/help-pmix-runtime.txt: No such file or directory. Sorry! > -------------------------------------------------------------------------- > [ip-10-84-234-19:2164897] PMIX ERROR: NOT-FOUND in file > ../../../../../../../../opal/mca/pmix/pmix3x/pmix/src/server/pmix_server.c at > line 237 > [ip-10-84-234-19:2164891] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start > a daemon on the local node in file > ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 716 > [ip-10-84-234-19:2164891] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start > a daemon on the local node in file > ../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 172 > -------------------------------------------------------------------------- > It looks like orte_init failed for some reason; your parallel process is > likely to abort. There are many reasons that a parallel process can > fail during orte_init; some of which are due to configuration or > environment problems. This failure appears to be an internal failure; > here's some additional information (which may only be relevant to an > Open MPI developer): > > orte_ess_init failed > --> Returned value Unable to start a daemon on the local node (-127) > instead of ORTE_SUCCESS > -------------------------------------------------------------------------- > -------------------------------------------------------------------------- > It looks like MPI_INIT failed for some reason; your parallel process is > likely to abort. There are many reasons that a parallel process can > fail during MPI_INIT; some of which are due to configuration or environment > problems. This failure appears to be an internal failure; here's some > additional information (which may only be relevant to an Open MPI > developer): > > ompi_mpi_init: ompi_rte_init failed > --> Returned "Unable to start a daemon on the local node" (-127) instead of > "Success" (0) > -------------------------------------------------------------------------- > *** An error occurred in MPI_Init > *** on a NULL communicator > *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, > *** and potentially your MPI job) > [ip-10-84-234-19:2164891] Local abort before MPI_INIT completed completed > successfully, but am not able to aggregate error messages, and not able to > guarantee that all other processes were killed! > ERROR: lazy loading failed for package ‘metaMix’ > * removing > ‘/<<PKGBUILDDIR>>/debian/r-cran-metamix/usr/lib/R/site-library/metaMix’ > dh_auto_install: error: R CMD INSTALL -l > /<<PKGBUILDDIR>>/debian/r-cran-metamix/usr/lib/R/site-library --clean . > "--built-timestamp='Sat, 21 Mar 2020 14:53:15 +0100'" returned exit code 1 > make: *** [debian/rules:4: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2024/04/20/r-cran-metamix_0.3-2_unstable-armhf.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240420;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240420&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.