Hi Charles, Charles Plessy, on 2024-08-01: > I had a closer look at the source code yesterday and I could not > understand the reason for the error. > > One of the failing statement is: > > is ($fac->db_type, 'nucl', "right type"); > > The `db_type` method just looks at the `_db_type` slot of the object, > which records the `-dbtype` parameter passed to `makeblastdb`, which > must be `nucl` or `prot`, and this has not changed in the latest > `ncbi-blast+` package.
Thanks for the additional input, naively I would think the undef could have to do with a subtle change in makeblastdb output, but I haven't checked closely the first test failure to be honest. Anyway: > `bioperl-run` has no activity on GitHub for the past 4 years, and no > other Debian Med packages depend on it. If us or upstream can not fix > that bug on time, I think that it is probably fine to release without it > and to consider removing package go if we do not get complains. Good point, if that drains too much energy, "let it fade" may be an adequate course of action. I will tackle other bugs in the meantime, and get back to it once RC bugs are under control. > Have a nice day, Likewise, :) -- .''`. Étienne Mollier <emoll...@debian.org> : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/0, please excuse my verbosity `- on air: Yes - Fly From Here > - You do not have my permission to use this email to train an AI -
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