Package: ftp.debian.org Severity: normal X-Debbugs-Cc: r-bioc-sparsematrixst...@packages.debian.org, debia...@lists.debian.org, cru...@debian.org Control: affects -1 + src:r-bioc-sparsematrixstats Control: block 1078965 by -1 Tags: moreinfo User: ftp.debian....@packages.debian.org Usertags: remove
Dear FTP Team,
As part of the Bioconductor 3.19 transition, the Debian R team agreed [0] to
remove builds for 32-bit architectures (where possible) in line with upstream's
cessation of support for 32-bit systems.
Here is the 17th such removal request, this time for r-bioc-sparsematrixstats. `dak` dig flag that
r-bioc-gsva also needs to be dealt with, and bug #1078965 has already been filed for that. Also
"r-bioc-delayedmatrixstats", but that package is "arch: all" and as far as I
can tell the removal of r-bioc-sparsematrixstats won't affect the buildability of any other package
(besides the aforementioned r-bioc-gsva):
$ ssh mirror.ftp-master.debian.org "dak rm --architecture=armel,armhf,i386
--no-arch-all-rdeps --binary-only --partial --rdep-check --no-action
r-bioc-sparsematrixstats"
Will remove the following packages from unstable:
r-bioc-sparsematrixstats | 1.14.0+dfsg-1 | armel, armhf, i386
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
------------------- Reason -------------------
----------------------------------------------
Checking reverse dependencies...
# Broken Depends:
r-bioc-gsva: r-bioc-gsva
# Broken Build-Depends:
r-bioc-delayedmatrixstats: r-bioc-sparsematrixstats (1.16.0 >=)
r-bioc-gsva: r-bioc-sparsematrixstats (1.16.0 >=)
Dependency problem found.
$ rmadison r-bioc-delayedmatrixstats
r-bioc-delayedmatrixstats | 1.12.3+ds-1 | oldstable | source, all
r-bioc-delayedmatrixstats | 1.20.0+ds-1 | stable | source, all
r-bioc-delayedmatrixstats | 1.26.0+ds-1 | buildd-unstable | source, all
r-bioc-delayedmatrixstats | 1.26.0+ds-1 | unstable | source, all
$ apt-cache rdepends r-bioc-delayedmatrixstats | sort -u | grep -v Reverse |
grep -v r-bioc-delayedmatrixstats
r-bioc-bsseq
r-bioc-delayedarray
r-bioc-dropletutils
r-bioc-glmgampoi
r-bioc-gsva
r-bioc-hdf5array
r-bioc-matrixgenerics
r-bioc-scaledmatrix
r-bioc-scater
r-bioc-scran
r-bioc-scuttle
r-bioc-singler
$ build-rdeps --distribution unstable r-bioc-delayedmatrixstats
Reverse Build-depends in unstable/main:
---------------------------------------
r-bioc-bsseq
r-bioc-demixt
r-bioc-dropletutils
r-bioc-dss
r-bioc-glmgampoi
r-bioc-gsva
r-bioc-scater
r-bioc-scran
r-bioc-scuttle
r-bioc-singler
Found a total of 10 reverse build-depend(s) for r-bioc-delayedmatrixstats.
Reverse Build-depends in unstable/contrib:
------------------------------------------
No reverse build-depends found for r-bioc-delayedmatrixstats.
Reverse Build-depends in unstable/non-free:
-------------------------------------------
No reverse build-depends found for r-bioc-delayedmatrixstats.
Reverse Build-depends in unstable/non-free-firmware:
----------------------------------------------------
No reverse build-depends found for r-bioc-delayedmatrixstats.
$ # Same list as the rdepends, with the addition of "r-bioc-demixt" which is not in
"testing"
$ rmadison r-bioc-demixt
r-bioc-demixt | 1.6.0-1 | oldstable | source, amd64,
arm64, armhf, i386, mips64el, mipsel, ppc64el, s390x
r-bioc-demixt | 1.14.0+dfsg-1 | stable | source, amd64,
arm64, armel, armhf, i386, mips64el, mipsel, ppc64el, s390x
r-bioc-demixt | 1.18.0+dfsg-1 | unstable | source, amd64,
arm64, mips64el, ppc64el, riscv64, s390x
r-bioc-demixt | 1.18.0+dfsg-1 | unstable-debug | source
r-bioc-demixt | 1.20.0+dfsg-1~0exp1 | experimental | source, amd64,
arm64, mips64el, ppc64el, riscv64, s390x
r-bioc-demixt | 1.20.0+dfsg-1~0exp1 | experimental-debug | source
r-bioc-demixt | 1.20.0+dfsg-1 | buildd-unstable | source
r-bioc-demixt | 1.20.0+dfsg-1 | unstable | source
$ for pkg in $(apt-cache rdepends r-bioc-delayedmatrixstats | sort -u | grep -v
Reverse | grep -v r-bioc-delayedmatrixstats); do rmadison --suite=testing
${pkg}; done
r-bioc-matrixgenerics | 1.14.0-1 | testing | source, all
# I used build-rdeps to check all the reverse build-dependencies of
r-bioc-matrixgenerics for further investigation:
$ for pkg in $(cat r-bioc-matrixgenerics_rdeps.txt); do rmadison
--suite=testing ${pkg}; done
r-bioc-sparsematrixstats | 1.14.0+dfsg-1 | testing | source, amd64,
arm64, armel, armhf, i386, mips64el, ppc64el, s390x
r-bioc-sparsematrixstats | 1.14.0+dfsg-1+b1 | testing | riscv64
---
Thanks!
[0] https://lists.debian.org/debian-r/2024/07/msg00033.html
https://lists.debian.org/debian-r/2024/07/msg00035.html
https://lists.debian.org/debian-r/2024/07/msg00045.html
--
Michael R. Crusoe
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