On Fri, 27 Sep 2024 19:25:10 +0200 Aurelien Jarno <aurel...@aurel32.net> wrote:
TIL disorderfs. I have also been able to reproduce it with disorderfs.
In addition knowing the root of the issue, I have been able to
reproduce the issue on a riscv64 machine using tmpfs as a build
directory, just like on the build daemons.
> Didn't have time to debug it further yet.
>
> Hope this helps,
Definitely, thanks a lot!
Hello everyone,
I am also amazed, I did not know about disorderfs before.
I could reproduce the failure with rr-debugger on top of
a disorderfs and compared it with a successful run (both on amd64).
In the unsuccessful run the iteration through the
predicted readdir does not return the expected file [1].
So in the bad case readdir of directory src/components/codcif
does "just" not return the file "cif_list_tags" in my example
and at least for the disorderfs case.
Even more bad is this file looks like it was created just before [2].
So does disorderfs some caching, which causes this readdir
not to return the already created file?
Or is there some caching on kernel side involved as this affects
also tmpfs (not just fuse)?
I would be happy to debug this further,
with some pointers to which parts are of interest...
Kind regard,
Bernhard
[1]
Breakpoint 22, dir_contents_file_exists_p (dir=0x55c8aa58a3c0,
filename=filename@entry=0x55c8aba3cc66 "cif_list_tags") at ../../src/dir.c:713
713 if (!REAL_DIR_ENTRY (d))
7: x/i $pc
=> 0x55c8872cce20 <dir_contents_file_exists_p+208>: cmpq $0x0,(%rax)
9: (char*)d->d_name = 0x55c8aa8abba3 "cif_options.c"
(rr) bt
#0 dir_contents_file_exists_p (dir=0x55c8aa58a3c0,
filename=filename@entry=0x55c8aba3cc66 "cif_list_tags") at ../../src/dir.c:713
#1 0x000055c8872cd2a1 in dir_contents_file_exists_p (filename=0x55c8aba3cc66
"cif_list_tags", dir=<optimized out>) at ../../src/dir.c:849
#2 dir_file_exists_p (filename=0x55c8aba3cc66 "cif_list_tags", dirname=<optimized
out>) at ../../src/dir.c:774
#3 file_exists_p (name=0x55c8aba3cc50 "src/components/codcif/cif_list_tags")
at ../../src/dir.c:851
#4 0x000055c8872d5f45 in pattern_search (file=file@entry=0x55c8aa595710,
archive=archive@entry=0, depth=depth@entry=5, recursions=recursions@entry=0) at
../../src/implicit.c:758
#5 0x000055c8872d6aa3 in try_implicit_rule (file=file@entry=0x55c8aa595710,
depth=depth@entry=5) at ../../src/implicit.c:45
#6 0x000055c8872e49ac in update_file_1 (depth=<optimized out>,
file=0x55c8aa595710) at ../../src/remake.c:506
#7 update_file (file=<optimized out>, depth=<optimized out>) at
../../src/remake.c:336
#8 0x000055c8872e5875 in check_dep (file=0x55c8aa595710, depth=4,
depth@entry=3, this_mtime=this_mtime@entry=1,
must_make_ptr=must_make_ptr@entry=0x7ffcf9a5c664) at ../../src/remake.c:1024
#9 0x000055c8872e4676 in update_file_1 (depth=<optimized out>,
file=0x55c8aa5958f0) at ../../src/remake.c:572
#10 update_file (file=<optimized out>, depth=<optimized out>) at
../../src/remake.c:336
#11 0x000055c8872e5875 in check_dep (file=0x55c8aa5958f0, depth=2,
depth@entry=1, this_mtime=this_mtime@entry=1,
must_make_ptr=must_make_ptr@entry=0x7ffcf9a5c7a4) at ../../src/remake.c:1024
#12 0x000055c8872e4676 in update_file_1 (depth=<optimized out>,
file=0x55c8aa589db0) at ../../src/remake.c:572
#13 update_file (file=file@entry=0x55c8aa589db0, depth=<optimized out>) at
../../src/remake.c:336
#14 0x000055c8872e5cd4 in update_goal_chain (goaldeps=<optimized out>) at
../../src/remake.c:151
#15 0x000055c8872c9ef5 in main (argc=<optimized out>, argv=<optimized out>,
envp=<optimized out>) at ../../src/main.c:2589
(rr) print *dir->dirstream
$37 = {fd = 4, lock = 0, allocation = 32768, size = 1632, offset = 920, filepos = 1000,
errcode = 0, data = 0x55c8aa8ab820 "1'\002"}
(rr)
[2]
...
sed 's/@VERSION@/3.10.0/' version.hin > version.h
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wall -Wsign-compare -g -O3 -funroll-loops -fomit-frame-pointer -foptimize-register-move
-DYYDEBUG=1 -D_YACC_ -I. -I../../externals/cexceptions -I../../externals/getoptions -fPIC
-DSVN_VERSION="\"10068\"" -Wl,-z,relro -Wl,-z,now -o cif_list_tags
programs/cif_list_tags.c obj/cif2_grammar.tab.o obj/cif_grammar.tab.o lib/libcodcif.a
../../externals/cexceptions/lib/libcexceptions.a ../../externals/getoptions/lib/libgetoptions.a
version.h -lm
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wall -Wsign-compare -g -O3 -funroll-loops -fomit-frame-pointer -foptimize-register-move
-DYYDEBUG=1 -D_YACC_ -I. -I../../externals/cexceptions -I../../externals/getoptions -fPIC
-DSVN_VERSION="\"10068\"" -Wl,-z,relro -Wl,-z,now -o cifparse
programs/cifparse.c obj/cif2_grammar.tab.o obj/cif_grammar.tab.o lib/libcodcif.a
../../externals/cexceptions/lib/libcexceptions.a ../../externals/getoptions/lib/libgetoptions.a
version.h -lm
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wall -Wsign-compare -g -O3 -funroll-loops -fomit-frame-pointer -foptimize-register-move
-DYYDEBUG=1 -D_YACC_ -I. -I../../externals/cexceptions -I../../externals/getoptions -fPIC
-DSVN_VERSION="\"10068\"" -Wl,-z,relro -Wl,-z,now -o cifvalues
programs/cifvalues.c obj/cif2_grammar.tab.o obj/cif_grammar.tab.o lib/libcodcif.a
../../externals/cexceptions/lib/libcexceptions.a ../../externals/getoptions/lib/libgetoptions.a
version.h -lm
make[2]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/components/codcif'
make -C
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/AdHoc/
make[2]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/AdHoc'
yapp -v -m COD::Formulae::Parser::AdHoc -o - grammar.yp | sed
's/@VERSION@/3.10.0/' > lib/COD/Formulae/Parser/AdHoc.pm
make[2]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/AdHoc'
cp
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/AdHoc//lib/COD/Formulae/Parser/AdHoc.pm
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/AdHoc.pm
make -C
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/IUCr/
make[2]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/IUCr'
yapp -v -m COD::Formulae::Parser::IUCr -o - grammar.yp | sed 's/@VERSION@/3.10.0/'
> lib/COD/Formulae/Parser/IUCr.pm
make[2]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/IUCr'
cp
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/IUCr//lib/COD/Formulae/Parser/IUCr.pm
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae/Parser/IUCr.pm
make -C
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Yapp/
make[2]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Yapp'
yapp -v -m COD::CIF::Parser::Yapp -o - grammar.yp | sed 's/@VERSION@/3.10.0/' >
lib/COD/CIF/Parser/Yapp.pm
make[2]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Yapp'
cp
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Yapp//lib/COD/CIF/Parser/Yapp.pm
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Yapp.pm
make -C
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Bison/
make[2]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Bison'
swig -perl5 -Wall -outdir lib/COD/CIF/Parser/ source.i
cc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wall -Wno-unused-value -D_REENTRANT
-D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -fPIC
-I/usr/lib/x86_64-linux-gnu/perl/5.38/CORE -I.
-I../../../../../../components/codcif -I../../../../../../externals/cexceptions
-c source.c source_wrap.c
cc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -shared -L/usr/local/lib
-fstack-protector-strong -Wl,-z,relro -Wl,-z,now source.o source_wrap.o
../../../../../../components/codcif/lib/libcodcif.a
../../../../../../externals/cexceptions/lib/libcexceptions.a -o
lib/auto/COD/CIF/Parser/Bison/Bison.so
make[2]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Bison'
cp
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Bison/lib/COD/CIF/Parser/Bison.pm
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Bison.pm
cp
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Bison//lib/auto/COD/CIF/Parser/Bison/Bison.so
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/auto/COD/CIF/Parser/Bison/Bison.so
make -C
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/SPGLib/
make[2]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/SPGLib'
swig -perl5 -Wall -outdir lib/COD/ source.i
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wall -Wno-unused-value \
-I. -c \
`perl -MConfig -e 'print join(" ", @Config{qw(ccflags optimize cccdlflags)},
"-I$Config{archlib}/CORE")'` \
source.c source_wrap.c
cc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wall `perl -MConfig -e 'print
$Config{lddlflags}'` -Wl,-z,relro -Wl,-z,now source.o source_wrap.o -o
lib/auto/COD/SPGLib/SPGLib.so -lsymspg
make[2]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/SPGLib'
cp
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/SPGLib/lib/COD/SPGLib.pm
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/SPGLib.pm
cp
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/SPGLib//lib/auto/COD/SPGLib/SPGLib.so
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/auto/COD/SPGLib/SPGLib.so
make -C
/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/components/pycodcif
all
make[2]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/components/pycodcif'
sed 's/@@VERSION@@/'3.10.0'/' < setup.pyin > setup.py
python3 setup.py build --build-lib build/python3/ && touch
build/python3/pycodcif/pycodcif.py
running build
running build_py
running build_ext
building 'pycodcif._pycodcif' extension
swigging pycodcif.i to pycodcif_wrap.c
swig -python -o pycodcif_wrap.c pycodcif.i
creating build
creating build/temp.linux-x86_64-cpython-312
creating build/temp.linux-x86_64-cpython-312/src
creating build/temp.linux-x86_64-cpython-312/src/components
creating build/temp.linux-x86_64-cpython-312/src/components/codcif
creating build/temp.linux-x86_64-cpython-312/src/externals
creating build/temp.linux-x86_64-cpython-312/src/externals/cexceptions
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c pycodcif.c -o
build/temp.linux-x86_64-cpython-312/pycodcif.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c pycodcif_wrap.c -o
build/temp.linux-x86_64-cpython-312/pycodcif_wrap.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif2_grammar.tab.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif2_grammar.tab.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif2_lexer.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif2_lexer.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif_compiler.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_compiler.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif_grammar.tab.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_grammar.tab.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif_grammar_flex.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_grammar_flex.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif_lex_buffer.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_lex_buffer.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif_lexer.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_lexer.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cif_options.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_options.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/ciflist.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/ciflist.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cifmessage.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cifmessage.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/ciftable.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/ciftable.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/cifvalue.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cifvalue.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/common.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/common.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/components/codcif/datablock.c -o
build/temp.linux-x86_64-cpython-312/src/components/codcif/datablock.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/externals/cexceptions/allocx.c -o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/allocx.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/externals/cexceptions/cexceptions.c -o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/cexceptions.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/externals/cexceptions/cxprintf.c -o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/cxprintf.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/externals/cexceptions/stdiox.c -o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/stdiox.o
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall
-g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-D_YACC_ -DYYDEBUG=1 -DHAS_VSNPRINTF -Isrc/externals/cexceptions
-Isrc/components/codcif -I/usr/include/python3.12 -c
src/externals/cexceptions/stringx.c -o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/stringx.o
creating build/python3
creating build/python3/pycodcif
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g
-fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2
-Werror=implicit-function-declaration
-ffile-prefix-map=/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2
build/temp.linux-x86_64-cpython-312/pycodcif.o
build/temp.linux-x86_64-cpython-312/pycodcif_wrap.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif2_grammar.tab.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif2_lexer.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_compiler.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_grammar.tab.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_grammar_flex.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_lex_buffer.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_lexer.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cif_options.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/ciflist.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cifmessage.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/ciftable.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/cifvalue.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/common.o
build/temp.linux-x86_64-cpython-312/src/components/codcif/datablock.o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/allocx.o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/cexceptions.o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/cxprintf.o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/stdiox.o
build/temp.linux-x86_64-cpython-312/src/externals/cexceptions/stringx.o
-L/usr/lib/x86_64-linux-gnu -o
build/python3/pycodcif/_pycodcif.cpython-312-x86_64-linux-gnu.so
copying ./__init__.py -> build/python3/pycodcif
copying ./pycodcif.py -> build/python3/pycodcif
make[2]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/components/pycodcif'
sed 's/@VERSION@/3.10.0/' src/lib/perl5/COD/ToolsVersion.pmin >
src/lib/perl5/COD/ToolsVersion.pm
make -C src
make[2]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src'
make[3]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/externals'
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'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/externals/getoptions'
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make[3]: Leaving directory
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make[3]: Entering directory
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'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/components/codcif'
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make[4]: Leaving directory
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'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/components/pycodcif'
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make[3]: Leaving directory
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make[5]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD'
make[6]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF'
make[7]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser'
make[8]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Bison'
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'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/CIF/Parser/Yapp'
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make[8]: Leaving directory
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make[6]: Leaving directory
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make[6]: Entering directory
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make[8]: Entering directory
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make[7]: Leaving directory
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make[6]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/Formulae'
make[6]: Entering directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/SPGLib'
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make[6]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD/SPGLib'
make[5]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5/COD'
make[4]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src/lib/perl5'
make[3]: Leaving directory
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make[2]: Leaving directory
'/home/benutzer/source/cod-tools/tryC-disorderfs/cod-tools-3.10.0+dfsg/src'
tools/help2man scripts/cif-to-utf8 --bugs-email cod-b...@ibt.lt >
doc/man/cif-to-utf8.1
tools/help2man scripts/cif2cod --bugs-email cod-b...@ibt.lt > doc/man/cif2cod.1
tools/help2man scripts/cif2csv --bugs-email cod-b...@ibt.lt > doc/man/cif2csv.1
tools/help2man scripts/cif2json --bugs-email cod-b...@ibt.lt >
doc/man/cif2json.1
tools/help2man scripts/cif2rdf --bugs-email cod-b...@ibt.lt > doc/man/cif2rdf.1
tools/help2man scripts/cif2ref --bugs-email cod-b...@ibt.lt > doc/man/cif2ref.1
tools/help2man scripts/cif2xyz --bugs-email cod-b...@ibt.lt > doc/man/cif2xyz.1
tools/help2man scripts/cif_CODify --bugs-email cod-b...@ibt.lt >
doc/man/cif_CODify.1
tools/help2man scripts/cif_Fcalc --bugs-email cod-b...@ibt.lt >
doc/man/cif_Fcalc.1
tools/help2man scripts/cif_adjust_journal_name_volume --bugs-email cod-b...@ibt.lt
> doc/man/cif_adjust_journal_name_volume.1
tools/help2man scripts/cif_automorphism --bugs-email cod-b...@ibt.lt >
doc/man/cif_automorphism.1
tools/help2man scripts/cif_bounding_box --bugs-email cod-b...@ibt.lt >
doc/man/cif_bounding_box.1
tools/help2man scripts/cif_cell_contents --bugs-email cod-b...@ibt.lt >
doc/man/cif_cell_contents.1
tools/help2man scripts/cif_classify --bugs-email cod-b...@ibt.lt >
doc/man/cif_classify.1
tools/help2man scripts/cif_cod_check --bugs-email cod-b...@ibt.lt >
doc/man/cif_cod_check.1
tools/help2man scripts/cif_cod_deposit --bugs-email cod-b...@ibt.lt >
doc/man/cif_cod_deposit.1
tools/help2man scripts/cif_cod_numbers --bugs-email cod-b...@ibt.lt >
doc/man/cif_cod_numbers.1
tools/help2man scripts/cif_compare_dics --bugs-email cod-b...@ibt.lt >
doc/man/cif_compare_dics.1
tools/help2man scripts/cif_correct_tags --bugs-email cod-b...@ibt.lt >
doc/man/cif_correct_tags.1
tools/help2man scripts/cif_create_AMCSD_pressure_temp_tags --bugs-email
cod-b...@ibt.lt > doc/man/cif_create_AMCSD_pressure_temp_tags.1
tools/help2man scripts/cif_ddl1_dic_check --bugs-email cod-b...@ibt.lt >
doc/man/cif_ddl1_dic_check.1
tools/help2man scripts/cif_ddlm_dic_check --bugs-email cod-b...@ibt.lt >
doc/man/cif_ddlm_dic_check.1
tools/help2man scripts/cif_ddlm_dic_print --bugs-email cod-b...@ibt.lt >
doc/man/cif_ddlm_dic_print.1
tools/help2man scripts/cif_dictionary_tags --bugs-email cod-b...@ibt.lt >
doc/man/cif_dictionary_tags.1
tools/help2man scripts/cif_diff --bugs-email cod-b...@ibt.lt >
doc/man/cif_diff.1
tools/help2man scripts/cif_distances --bugs-email cod-b...@ibt.lt >
doc/man/cif_distances.1
tools/help2man scripts/cif_estimate_Z --bugs-email cod-b...@ibt.lt >
doc/man/cif_estimate_Z.1
tools/help2man scripts/cif_eval_numbers --bugs-email cod-b...@ibt.lt >
doc/man/cif_eval_numbers.1
tools/help2man scripts/cif_fillcell --bugs-email cod-b...@ibt.lt >
doc/man/cif_fillcell.1
tools/help2man scripts/cif_filter --bugs-email cod-b...@ibt.lt >
doc/man/cif_filter.1
tools/help2man scripts/cif_find_duplicates --bugs-email cod-b...@ibt.lt >
doc/man/cif_find_duplicates.1
tools/help2man scripts/cif_find_symmetry --bugs-email cod-b...@ibt.lt >
doc/man/cif_find_symmetry.1
tools/help2man scripts/cif_fix_values --bugs-email cod-b...@ibt.lt >
doc/man/cif_fix_values.1
tools/help2man scripts/cif_guess_AMCSD_atom_types --bugs-email cod-b...@ibt.lt
> doc/man/cif_guess_AMCSD_atom_types.1
tools/help2man scripts/cif_hkl_COD_number --bugs-email cod-b...@ibt.lt >
doc/man/cif_hkl_COD_number.1
tools/help2man scripts/cif_hkl_check --bugs-email cod-b...@ibt.lt >
doc/man/cif_hkl_check.1
tools/help2man scripts/cif_mark_disorder --bugs-email cod-b...@ibt.lt >
doc/man/cif_mark_disorder.1
tools/help2man scripts/cif_merge --bugs-email cod-b...@ibt.lt >
doc/man/cif_merge.1
tools/help2man scripts/cif_molecule --bugs-email cod-b...@ibt.lt >
doc/man/cif_molecule.1
tools/help2man scripts/cif_mpod_v1_to_v2 --bugs-email cod-b...@ibt.lt >
doc/man/cif_mpod_v1_to_v2.1
tools/help2man scripts/cif_mpod_v1_to_v3 --bugs-email cod-b...@ibt.lt >
doc/man/cif_mpod_v1_to_v3.1
tools/help2man scripts/cif_mpod_v2_to_v1 --bugs-email cod-b...@ibt.lt >
doc/man/cif_mpod_v2_to_v1.1
tools/help2man scripts/cif_mpod_v3_to_v1 --bugs-email cod-b...@ibt.lt >
doc/man/cif_mpod_v3_to_v1.1
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make[1]: *** No rule to make target 'doc/man/cif_list_tags.1', needed by 'man'.
Stop.
