Source: arden Version: 1.0-5 User: [email protected] Usertags: syntaxwarning
Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/a/arden.html Setting up python3 (3.12.6-1) ... /usr/share/arden/core/AnalyseMapping.py:169: SyntaxWarning: invalid escape sequence '\d' mism = sum([i.size for i in cigar if i.type=="M"]) - getsum(re.findall("(\d+)", alngt.optional_field("MD"))) /usr/share/arden/core/AnalyseMapping.py:252: SyntaxWarning: invalid escape sequence '\d' deletions = getsum(re.findall("(\d+)D", cigar)) /usr/share/arden/core/AnalyseMapping.py:253: SyntaxWarning: invalid escape sequence '\d' insertions = getsum(re.findall("(\d+)I", cigar)) /usr/share/arden/core/AnalyseMapping.py:260: SyntaxWarning: invalid escape sequence '\d' mismatch = getsum(re.findall("(\d+)M", cigar)) - getsum(re.findall("(\d+)", mdtag)) /usr/share/arden/core/AnalyseMapping.py:260: SyntaxWarning: invalid escape sequence '\d' mismatch = getsum(re.findall("(\d+)M", cigar)) - getsum(re.findall("(\d+)", mdtag)) /usr/share/arden/core/AnalyseMapping.py:651: SyntaxWarning: invalid escape sequence '\d' m = re.search(tag + ":i:(\d+)", line) /usr/share/arden/core/AnalyseMapping.py:717: SyntaxWarning: invalid escape sequence '\d' match = re.findall("(\d+)[MDN]", cigar) /usr/share/arden/core/AnalyseMapping.py:917: SyntaxWarning: invalid escape sequence '\s' mdtag = re.search("MD:Z:([^\s]+)", tags).group(1) /usr/share/arden/core/AnalyseMapping.py:919: SyntaxWarning: invalid escape sequence '\s' mdtag = re.search("MD:Z:([^\s]+)", tags).group(1)
