Source: obitools Version: 1.2.13+dfsg-9 User: [email protected] Usertags: syntaxwarning
Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/o/obitools.html Setting up obitools (1.2.13+dfsg-9+b1) ... /usr/lib/python3/dist-packages/obitools/align/ssearch.py:9: SyntaxWarning: invalid escape sequence '\d' _matchLQuery = re.compile("^Query:.+\n.+?(\d+)(?= nt\n)", re.MULTILINE) /usr/lib/python3/dist-packages/obitools/alignment/ace.py:11: SyntaxWarning: invalid escape sequence '\S' _contigIterator.addParseAction('AF', '\nAF +(\S+) +([UC]) +(-?[0-9]+)') /usr/lib/python3/dist-packages/obitools/alignment/ace.py:12: SyntaxWarning: invalid escape sequence '\S' _contigIterator.addParseAction('RD', '\nRD +(\S+) +([0-9]+) +([0-9]+) +([0-9]+) *\n([A-Za-z\n*]+?)\n\n') /usr/lib/python3/dist-packages/obitools/alignment/ace.py:14: SyntaxWarning: invalid escape sequence '\S' _contigIterator.addParseAction('CO', '^CO (\S+)') /usr/lib/python3/dist-packages/obitools/fnaqual/__init__.py:2: SyntaxWarning: invalid escape sequence '\s' fnaTag=' %s *= *([^\s]+)' /usr/lib/python3/dist-packages/obitools/location/__init__.py:479: SyntaxWarning: invalid escape sequence '\.' __simplelocparser = re.compile('(?P<before><?)(?P<from>[0-9]+)(\.\.(?P<after>>?)(?P<to>[0-9]+))?') /usr/lib/python3/dist-packages/obitools/location/__init__.py:523: SyntaxWarning: invalid escape sequence '\.' _matchExternalRef = re.compile('[A-Za-z0-9_|]+(\.[0-9]+)?(?=:)') /usr/lib/python3/dist-packages/obitools/location/feature.py:67: SyntaxWarning: invalid escape sequence '\S' _ftmatcher = re.compile('(?<=^ {5})\S+') /usr/lib/python3/dist-packages/obitools/location/feature.py:69: SyntaxWarning: invalid escape sequence '\s' _cleanloc = re.compile('[\s\n]+') /usr/lib/python3/dist-packages/obitools/obo/parser.py:54: SyntaxWarning: invalid escape sequence '\ ' _match_brace = re.compile('(?<=\ {)[^\]]*(\}) *( !|$)') /usr/lib/python3/dist-packages/obitools/obo/parser.py:102: SyntaxWarning: invalid escape sequence '\[' _match_bracket = re.compile('\[[^\]]*\]') /usr/lib/python3/dist-packages/obitools/obo/parser.py:230: SyntaxWarning: invalid escape sequence '\[' _match_scope = re.compile('(?<="")[^\[]*(?=\[|$)') /usr/lib/python3/dist-packages/obitools/obo/parser.py:520: SyntaxWarning: invalid escape sequence '\[' _match_stanza_name = re.compile('(?<=^\[)[^\]]*(?=\])') /usr/lib/python3/dist-packages/obitools/phylogeny/newick.py:25: SyntaxWarning: invalid escape sequence '\s' _nodeParser=re.compile('\s*(?P<subnodes>\(.*\))?(?P<name>[^ :]+)? *(?P<bootstrap>[0-9.]+)?(:(?P<distance>-?[0-9.]+))?') /usr/lib/python3/dist-packages/obitools/phylogeny/newick.py:47: SyntaxWarning: invalid escape sequence '\s' _cleanTreeData=re.compile('\s+') /usr/lib/python3/dist-packages/obitools/phylogeny/newick.py:73: SyntaxWarning: invalid escape sequence '\[' _treecomment=re.compile('\[.*\]') /usr/lib/python3/dist-packages/obitools/table/csv.py:25: SyntaxWarning: invalid escape sequence '\s' valueMatcher=re.compile('\s*((")(([^"]|"")*)"|([^%s]*?))\s*(%s|$)' % (sep,sep)) /usr/lib/python3/dist-packages/obitools/tagmatcher/parser.py:11: SyntaxWarning: invalid escape sequence '\(' _loMatcher = re.compile('(?<=LO ) *([ACGTRYMKWSBDHVN]+) +([^ ]+) +([^ ]+) +\(([0-9]+)\)') /usr/lib/python3/dist-packages/obitools/tree/newick.py:25: SyntaxWarning: invalid escape sequence '\s' _nodeParser=re.compile('\s*(?P<subnodes>\(.*\))?(?P<name>[^ :]+)? *(?P<bootstrap>[0-9.]+)?(:(?P<distance>-?[0-9.]+))?') /usr/lib/python3/dist-packages/obitools/tree/newick.py:47: SyntaxWarning: invalid escape sequence '\s' _cleanTreeData=re.compile('\s+') /usr/lib/python3/dist-packages/obitools/tree/newick.py:67: SyntaxWarning: invalid escape sequence '\[' _treecomment=re.compile('\[.*\]') /usr/lib/python3/dist-packages/obitools/utils/__init__.py:192: SyntaxWarning: invalid escape sequence '\w' extraformat='([a-zA-Z]\w*) *= *([^;]+);'):
