Package: src:libsbml Version: 5.20.5+dfsg-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202601/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:libsbml, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --builddir=build --buildsystem=cmake --without autoreconf --no-parallel dh_auto_clean -O--builddir=build -O--buildsystem=cmake -O--no-parallel debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' ### the clean target of the libsbml makefile is highly b0rken ### ### the switch to cmake didn't result in great approvements ### ### still inline changes of files ### ### very ugly ### rm -rf build docs/formatted docs/src/doxygen-version-specific.txt docs/src/doxygen-config-cpp.txt \ docs/src/doxygen-config-csharp.txt docs/src/doxygen-config-perl.txt docs/src/doxygen-config-python.txt \ docs/src/java-substitutions/libsbmlConstants.java docs/src/libsbml-installation.html docs/src/perlmod/DoxyDocs.pm \ docs/src/perlmod/DoxyStructure.pm docs/src/perlmod/Makefile docs/src/perlmod/doxyrules.make \ src/bindings/matlab/runTests.log docs/src/doxygen-config-c.txt src/bindings/matlab/*.mex* docs/src/perlmod \ docs/src/doxygen_sqlite3.db docs/src/libsbml.py docs/src/common-text/libsbml-version.html [... snipped ...] -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L2v2CompatibilityValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L2v3CompatibilityValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L2v4CompatibilityValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L3v1CompatibilityValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/L3v2CompatibilityValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/MathMLConsistencyValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/ModelingPracticeValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/OverdeterminedValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/SBMLExternalValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/SBMLInternalValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/SBMLValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/SBOConsistencyValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/StrictUnitConsistencyValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/UnitConsistencyValidator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/VConstraint.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/validator/Validator.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/ExpatAttributes.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/ExpatHandler.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/ExpatParser.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLAttributes.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLHandler.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLNamespaces.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLParser.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/LibXMLTranscode.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLAttributes.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLBuffer.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLConstructorException.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLError.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLErrorLog.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLExtern.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLFileBuffer.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLHandler.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLInputStream.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLLogOverride.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLMemoryBuffer.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLNamespaces.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLNode.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLOutputStream.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLParser.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLToken.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLTokenizer.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XMLTriple.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesAttributes.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesHandler.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesNamespaces.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesParser.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/xml/XercesTranscode.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/AlgebraicRule.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/AssignmentRule.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Compartment.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/CompartmentType.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Constraint.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Delay.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Event.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/EventAssignment.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/ExpectedAttributes.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/FunctionDefinition.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/InitialAssignment.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/KineticLaw.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/ListOf.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/LocalParameter.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Model.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/ModifierSpeciesReference.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Parameter.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Priority.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/RateRule.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Reaction.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Rule.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLConstructorException.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLDocument.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLError.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLErrorLog.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLErrorTable.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLNamespaces.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLReader.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLTransforms.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLTypeCodes.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLTypes.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLVisitor.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBMLWriter.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBO.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SBase.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SimpleSpeciesReference.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Species.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SpeciesReference.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SpeciesType.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/StoichiometryMath.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/SyntaxChecker.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Trigger.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/Unit.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/UnitDefinition.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/UnitKind.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-config-common.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-config-packages.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-namespace.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-package.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/common/libsbml-version.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/sbml/extension/RegisterExtensions.h -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbml.so.5.20.5 -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbml.so.5 -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbml.so -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-targets.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-targets-none.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-config-version.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-config.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbml-static.a -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-static-targets.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-static-targets-none.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-static-config-version.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/sbml-static-config.cmake -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/libsbmlj.so -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/java/libsbmlj.jar -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5/5.40/LibSBML.pod -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5/5.40/LibSBML.pm -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5/5.40/auto/LibSBML/LibSBML.so -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/TranslateSBML.mex -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/OutputSBML.mex -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/addLevelVersion.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/applyUserValidation.m -- Installing: 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/<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/getStructureFieldnames.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/getValueType.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/installSBML.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/isEnabled.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/isFbcEnabled.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/isoctave.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/isSBML_Model.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/OutputSBML.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/TranslateSBML.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/compareFiles.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/runTests.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testBinding.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testCVTerms.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testGetSBMLDefaultStruct.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testIsSBMLModel.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testMissingOutput.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testOutput.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFlags.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile1.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile10.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile11.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile12.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile13.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile14.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile15.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile16.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile2.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile3.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile4.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile5.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile6.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile7.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile8.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFile9.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFileFbc1.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFileFbc2.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFileFbc3.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFromFileFbc4.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadWriteGeneProductIds.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadWriteGeneProducts.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testReadFbcKeyValuePair.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testAddKeyValuePairs.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/testVersionInformation.m -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/algebraicRules.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/both.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/convertedFormulas.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/convertedFormulas2.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/convertedFormulasL2.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/createdAnnotation.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/createdAnnotationL2.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/csymbolAvogadro.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/csymbolDelay.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/csymbolTime-reaction-l2.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/csymbolTime.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/errors.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fatal.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcL3V2V1.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcL3V2V2.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcV2.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcV2Labels.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc_groups.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc_qual.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc_qual_groups.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcV3.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbcV3_1.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/fbc_kvp.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/funcDefsWithInitialAssignments.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/functionDefinition.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/groups-example1.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/groups_qual.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/initialAssignments.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1-branch.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1-minimal.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1-rules.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1-units.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v1.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l1v2-all.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v1-all.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v1-allelements.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v1-assignment.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v2-all.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v2-newComponents.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v2-newelements.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v3-all.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v3-newelements.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v3-newMath.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v4-all.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l2v5-all.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v1core.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2-empty-event.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2-empty-math.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2-newmath.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2-no-model.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/l3v2core.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/math_no_arguments.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/missing_out.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/nestedPiecewise.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/none.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/nonLogicals.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/notes_annotations.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/outGP00.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/outGP01.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/outGP10.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/outGP11.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/piecewise.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/qual.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/rateRules.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/readerror.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/sparseStoichiometry.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/species.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/test-greek.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/octave/site/oct/x86_64-pc-linux-gnu/test/test-data/warn.xml -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/python3.13/site-packages/libsbml/_libsbml.so -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/python3.13/site-packages/libsbml.pth -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/python3.13/site-packages/libsbml/libsbml.py -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbmldocs -- Up-to-date: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbmldocs -- Up-to-date: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbmldocs -- Up-to-date: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbmldocs -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/COPYING.txt -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/FUNDING.txt -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/LICENSE.txt -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/NEWS.txt -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/README.md -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/VERSION.txt -- Installing: /<<PKGBUILDDIR>>/debian/tmp/<<PKGBUILDDIR>>/build/lib/x86_64-linux-gnu/pkgconfig/libsbml.pc make[1]: Leaving directory '/<<PKGBUILDDIR>>/build' debian/rules execute_after_dh_auto_install make[1]: Entering directory '/<<PKGBUILDDIR>>' mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/docs/ sed 's#formatted/##g' docs/index.html.in > /<<PKGBUILDDIR>>/debian/tmp/usr/share/libsbml/docs/index.html set -x ; \ for pyv in python3.13 ; do \ if [ -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/${pyv}/site-packages/ ] ; then \ mkdir -p /<<PKGBUILDDIR>>/debian/tmp/usr/lib/${pyv}/dist-packages ; \ mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/${pyv}/site-packages/* /<<PKGBUILDDIR>>/debian/tmp/usr/lib/${pyv}/dist-packages ; \ fi ; \ done + [ -d /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/python3.13/site-packages/ ] find /<<PKGBUILDDIR>>/debian/tmp/usr -type f -name "*.js" -delete find /<<PKGBUILDDIR>>/debian/tmp/usr -type f -name "*.md5" -delete find /<<PKGBUILDDIR>>/debian/tmp/usr -type f -exec chmod 644 {} + find /<<PKGBUILDDIR>>/debian/tmp/usr/lib -name "*.mex*" -exec strip --strip-unneeded {} + || true find /<<PKGBUILDDIR>>/debian/tmp/usr/lib -name "*.mex*" -exec strip --remove-section=.comment {} + || true dpkg-shlibdeps /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/octave/site/oct/*/*.mex -Tdebian/libsbml5-octave.substvars -l/usr/lib/x86_64-linux-gnu/octave/10.3.0 dpkg-shlibdeps: error: cannot read /<<PKGBUILDDIR>>/debian/tmp/usr/lib/*/octave/site/oct/*/*.mex: No such file or directory make[1]: *** [debian/rules:91: execute_after_dh_auto_install] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:53: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
