Package: src:iqtree Version: 2.0.7+dfsg-2 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202603/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:iqtree, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_clean -Bbuild.omp dh_auto_clean -Bbuild.serial dh_auto_clean -Bbuild.mpi dh override_dh_auto_clean make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure [... snipped ...] 259 | using std::remove_const_t; | ^~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:261:12: error: âremove_volatile_tâ has not been declared in âstdâ 261 | using std::remove_volatile_t; | ^~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:263:12: error: âadd_cv_tâ has not been declared in âstdâ 263 | using std::add_cv_t; | ^~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:265:12: error: âadd_const_tâ has not been declared in âstdâ 265 | using std::add_const_t; | ^~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:267:12: error: âadd_volatile_tâ has not been declared in âstdâ 267 | using std::add_volatile_t; | ^~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:271:12: error: âremove_reference_tâ has not been declared in âstdâ 271 | using std::remove_reference_t; | ^~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:273:12: error: âadd_lvalue_reference_tâ has not been declared in âstdâ 273 | using std::add_lvalue_reference_t; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:275:12: error: âadd_rvalue_reference_tâ has not been declared in âstdâ 275 | using std::add_rvalue_reference_t; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:279:12: error: âremove_pointer_tâ has not been declared in âstdâ 279 | using std::remove_pointer_t; | ^~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:281:12: error: âadd_pointer_tâ has not been declared in âstdâ 281 | using std::add_pointer_t; | ^~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:285:12: error: âmake_signed_tâ has not been declared in âstdâ 285 | using std::make_signed_t; | ^~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:287:12: error: âmake_unsigned_tâ has not been declared in âstdâ 287 | using std::make_unsigned_t; | ^~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:291:12: error: âremove_extent_tâ has not been declared in âstdâ 291 | using std::remove_extent_t; | ^~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:293:12: error: âremove_all_extents_tâ has not been declared in âstdâ 293 | using std::remove_all_extents_t; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:297:12: error: âdecay_tâ has not been declared in âstdâ 297 | using std::decay_t; | ^~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:299:12: error: âenable_if_tâ has not been declared in âstdâ 299 | using std::enable_if_t; | ^~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:301:12: error: âconditional_tâ has not been declared in âstdâ 301 | using std::conditional_t; | ^~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:303:12: error: âcommon_type_tâ has not been declared in âstdâ 303 | using std::common_type_t; | ^~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:305:12: error: âunderlying_type_tâ has not been declared in âstdâ 305 | using std::underlying_type_t; | ^~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/type_traits.hpp:397:60: error: âis_finalâ is not a member of âboost::mathâ; did you mean âis_final_vâ? 397 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value; | ^~~~~~~~ | is_final_v /usr/include/boost/math/tools/type_traits.hpp:397:70: error: expected primary-expression before â>â token 397 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value; | ^ /usr/include/boost/math/tools/type_traits.hpp:397:73: error: â::valueâ has not been declared 397 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value; | ^~~~~ In file included from /usr/include/boost/math/tools/precision.hpp:17, from /usr/include/boost/math/special_functions/beta.hpp:17: /usr/include/boost/math/policies/policy.hpp:945:90: error: âremove_reference_tâ in namespace âboost::mathâ does not name a template type; did you mean âremove_referenceâ? [-Wtemplate-body] 945 | static constexpr bool value = (sizeof(detail::test_is_policy(static_cast<boost::math::remove_reference_t<boost::math::remove_cv_t<P>>*>(nullptr))) == sizeof(char)); | ^~~~~~~~~~~~~~~~~~ | remove_reference /usr/include/boost/math/policies/policy.hpp:945:108: error: expected â>â before â<â token [-Wtemplate-body] 945 | static constexpr bool value = (sizeof(detail::test_is_policy(static_cast<boost::math::remove_reference_t<boost::math::remove_cv_t<P>>*>(nullptr))) == sizeof(char)); | ^ In file included from /usr/include/boost/math/special_functions/beta.hpp:21: /usr/include/boost/math/tools/promotion.hpp:90:36: error: âcommon_type_tâ in namespace âboost::mathâ does not name a template type; did you mean âcommon_typeâ? [-Wtemplate-body] 90 | using type = boost::math::common_type_t<T1, T2, float>; | ^~~~~~~~~~~~~ | common_type In file included from /usr/include/boost/math/special_functions/gamma.hpp:28, from /usr/include/boost/math/special_functions/beta.hpp:23: /usr/include/boost/math/special_functions/math_fwd.hpp:639:61: error: âboost::math::enable_if_tâ has not been declared; did you mean âboost::math::enable_ifâ? 639 | template <class T1, class T2, class Policy, boost::math::enable_if_t<policies::is_policy_v<Policy>, bool> = true> | ^~~~~~~~~~~ /usr/include/boost/math/special_functions/math_fwd.hpp:639:72: error: expected â>â before â<â token 639 | template <class T1, class T2, class Policy, boost::math::enable_if_t<policies::is_policy_v<Policy>, bool> = true> | ^ /usr/include/boost/math/special_functions/math_fwd.hpp:643:57: error: âboost::math::enable_if_tâ has not been declared; did you mean âboost::math::enable_ifâ? 643 | template <class T1, class T2, class T3, boost::math::enable_if_t<!policies::is_policy_v<T3>, bool> = true> | ^~~~~~~~~~~ /usr/include/boost/math/special_functions/math_fwd.hpp:643:68: error: expected â>â before â<â token 643 | template <class T1, class T2, class T3, boost::math::enable_if_t<!policies::is_policy_v<T3>, bool> = true> | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:30: /usr/include/boost/math/special_functions/trunc.hpp:324:44: error: âenable_if_tâ in namespace âboost::mathâ does not name a template type; did you mean âenable_ifâ? 324 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<int, T>, int> | ^~~~~~~~~~~ | enable_if /usr/include/boost/math/special_functions/trunc.hpp:331:44: error: âenable_if_tâ in namespace âboost::mathâ does not name a template type; did you mean âenable_ifâ? 331 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<!boost::math::is_constructible_v<int, T>, int> | ^~~~~~~~~~~ | enable_if /usr/include/boost/math/special_functions/trunc.hpp:339:44: error: âenable_if_tâ in namespace âboost::mathâ does not name a template type; did you mean âenable_ifâ? 339 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<long, T>, long> | ^~~~~~~~~~~ | enable_if /usr/include/boost/math/special_functions/trunc.hpp:346:44: error: âenable_if_tâ in namespace âboost::mathâ does not name a template type; did you mean âenable_ifâ? 346 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<!boost::math::is_constructible_v<long, T>, long> | ^~~~~~~~~~~ | enable_if /usr/include/boost/math/special_functions/trunc.hpp:354:44: error: âenable_if_tâ in namespace âboost::mathâ does not name a template type; did you mean âenable_ifâ? 354 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<long long, T>, long long> | ^~~~~~~~~~~ | enable_if /usr/include/boost/math/special_functions/trunc.hpp:361:53: error: âenable_if_tâ in namespace âboost::mathâ does not name a template type; did you mean âenable_ifâ? 361 | BOOST_MATH_GPU_ENABLED inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long> | ^~~~~~~~~~~ | enable_if /usr/include/boost/math/special_functions/trunc.hpp:361:64: error: expected unqualified-id before â<â token 361 | BOOST_MATH_GPU_ENABLED inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long> | ^ /usr/include/boost/math/special_functions/trunc.hpp:369:76: error: âenable_if_tâ in namespace âboost::mathâ does not name a template type; did you mean âenable_ifâ? 369 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline boost::math::enable_if_t<boost::math::is_constructible_v<long long, T>, long long> | ^~~~~~~~~~~ | enable_if /usr/include/boost/math/special_functions/trunc.hpp:376:85: error: âenable_if_tâ in namespace âboost::mathâ does not name a template type; did you mean âenable_ifâ? 376 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long> | ^~~~~~~~~~~ | enable_if /usr/include/boost/math/special_functions/trunc.hpp:376:96: error: expected unqualified-id before â<â token 376 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long> | ^ In file included from /usr/include/boost/math/special_functions/detail/polygamma.hpp:24, from /usr/include/boost/math/special_functions/polygamma.hpp:15, from /usr/include/boost/math/special_functions/gamma.hpp:42: /usr/include/boost/math/special_functions/pow.hpp:126:79: error: redeclaration âconstexpr typename boost::math::tools::promote_args<T2>::type boost::math::pow(T, const Policy&)â differs in âconstexprâ from previous declaration 126 | BOOST_MATH_GPU_ENABLED constexpr inline typename tools::promote_args<T>::type pow(T base, const Policy& policy) | ^~~ /usr/include/boost/math/special_functions/math_fwd.hpp:1181:79: note: previous declaration âboost::math::tools::promote_args_t<T> boost::math::pow(T, const Policy&)â 1181 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR tools::promote_args_t<T> pow(T base, const Policy& policy); | ^~~ /usr/include/boost/math/special_functions/pow.hpp:133:79: error: redeclaration âconstexpr typename boost::math::tools::promote_args<T2>::type boost::math::pow(T)â differs in âconstexprâ from previous declaration 133 | BOOST_MATH_GPU_ENABLED constexpr inline typename tools::promote_args<T>::type pow(T base) | ^~~ /usr/include/boost/math/special_functions/math_fwd.hpp:1184:79: note: previous declaration âboost::math::tools::promote_args_t<T> boost::math::pow(T)â 1184 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR tools::promote_args_t<T> pow(T base); | ^~~ /<<PKGBUILDDIR>>/alignment/alignment.cpp:3154:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 3154 | void convert_range(const char *str, int &lower, int &upper, int &step_size, char* &endptr) throw (string) { | ^~~~~ /usr/include/boost/math/tools/promotion.hpp: In instantiation of âstruct boost::math::tools::promote_args_permissive<double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >â: /usr/include/boost/math/tools/promotion.hpp:119:16: required from âstruct boost::math::tools::promote_args<double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >â 119 | using type = typename promote_args_permissive<Args...>::type; | ^~~~ /usr/include/boost/math/tools/promotion.hpp:129:13: required by substitution of âtemplate<class ... Args> using boost::math::tools::promote_args_t = typename boost::math::tools::promote_args::type [with Args = {double, double, boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>}]â 129 | using promote_args_t = typename promote_args<Args...>::type; | ^~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1720:4: required by substitution of âtemplate<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A) [with RT1 = double; RT2 = double; A = boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]â 1720 | beta(RT1 a, RT2 b, A arg) | ^~~~ /usr/include/boost/math/special_functions/binomial.hpp:47:55: required from âT boost::math::binomial_coefficient(unsigned int, unsigned int, const Policy&) [with T = double; Policy = policies::policy<policies::promote_double<false>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]â 47 | result = static_cast<T>(k * boost::math::beta(static_cast<T>(k), static_cast<T>(n-k+1), pol)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/binomial.hpp:71:98: required from here 71 | return policies::checked_narrowing_cast<float, forwarding_policy>(binomial_coefficient<double>(n, k, forwarding_policy()), "boost::math::binomial_coefficient<%1%>(unsigned,unsigned)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/promotion.hpp:105:16: error: no type named âtypeâ in âstruct boost::math::tools::pa2_integral_already_removed<double, double, true>â 105 | using type = typename pa2_integral_already_removed< | ^~~~ In file included from /usr/include/boost/math/special_functions/beta.hpp:33: /usr/include/boost/math/special_functions/binomial.hpp: In instantiation of âT boost::math::binomial_coefficient(unsigned int, unsigned int, const Policy&) [with T = double; Policy = policies::policy<policies::promote_double<false>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]â: /usr/include/boost/math/special_functions/binomial.hpp:71:98: required from here 71 | return policies::checked_narrowing_cast<float, forwarding_policy>(binomial_coefficient<double>(n, k, forwarding_policy()), "boost::math::binomial_coefficient<%1%>(unsigned,unsigned)"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/binomial.hpp:47:55: error: no matching function for call to âbeta(double, double, const boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>&)â 47 | result = static_cast<T>(k * boost::math::beta(static_cast<T>(k), static_cast<T>(n-k+1), pol)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/binomial.hpp:47:55: note: there are 3 candidates /usr/include/boost/math/special_functions/beta.hpp:1729:4: note: candidate 1: âtemplate<class RT1, class RT2> boost::math::tools::promote_args_t<RT1, RT2> boost::math::beta(RT1, RT2)â 1729 | beta(RT1 a, RT2 b) | ^~~~ /usr/include/boost/math/special_functions/beta.hpp:1729:4: note: candidate expects 2 arguments, 3 provided /usr/include/boost/math/special_functions/beta.hpp:1720:4: note: candidate 2: âtemplate<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A)â 1720 | beta(RT1 a, RT2 b, A arg) | ^~~~ /usr/include/boost/math/special_functions/beta.hpp:1720:4: note: substitution of deduced template arguments resulted in errors seen above /usr/include/boost/math/special_functions/beta.hpp:1736:4: note: candidate 3: âtemplate<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, RT3, const Policy&)â 1736 | beta(RT1 a, RT2 b, RT3 x, const Policy&) | ^~~~ /usr/include/boost/math/special_functions/beta.hpp:1736:4: note: candidate expects 4 arguments, 3 provided /usr/include/boost/math/special_functions/binomial.hpp:49:61: error: no matching function for call to âbeta(double, double, const boost::math::policies::policy<boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>&)â 49 | result = static_cast<T>((n - k) * boost::math::beta(static_cast<T>(k+1), static_cast<T>(n-k), pol)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/binomial.hpp:49:61: note: there are 3 candidates /usr/include/boost/math/special_functions/beta.hpp:1729:4: note: candidate 1: âtemplate<class RT1, class RT2> boost::math::tools::promote_args_t<RT1, RT2> boost::math::beta(RT1, RT2)â 1729 | beta(RT1 a, RT2 b) | ^~~~ /usr/include/boost/math/special_functions/beta.hpp:1729:4: note: candidate expects 2 arguments, 3 provided /usr/include/boost/math/special_functions/beta.hpp:1720:4: note: candidate 2: âtemplate<class RT1, class RT2, class A> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, A)â 1720 | beta(RT1 a, RT2 b, A arg) | ^~~~ /usr/include/boost/math/special_functions/beta.hpp:1720:4: note: template argument deduction/substitution failed: /usr/include/boost/math/special_functions/beta.hpp:1736:4: note: candidate 3: âtemplate<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::beta(RT1, RT2, RT3, const Policy&)â 1736 | beta(RT1 a, RT2 b, RT3 x, const Policy&) | ^~~~ /usr/include/boost/math/special_functions/beta.hpp:1736:4: note: candidate expects 4 arguments, 3 provided /usr/include/boost/math/tools/promotion.hpp: In instantiation of âstruct boost::math::tools::promote_args_permissive<double, double>â: /usr/include/boost/math/tools/promotion.hpp:105:16: required from âstruct boost::math::tools::promote_args_permissive<double, double, double>â 105 | using type = typename pa2_integral_already_removed< | ^~~~ /usr/include/boost/math/tools/promotion.hpp:119:16: required from âstruct boost::math::tools::promote_args<double, double, double>â 119 | using type = typename promote_args_permissive<Args...>::type; | ^~~~ /usr/include/boost/math/tools/promotion.hpp:129:13: required by substitution of âtemplate<class ... Args> using boost::math::tools::promote_args_t = typename boost::math::tools::promote_args::type [with Args = {double, double, double}]â 129 | using promote_args_t = typename promote_args<Args...>::type; | ^~~~~~~~~~~~~~ /usr/include/boost/math/special_functions/beta.hpp:1776:4: required by substitution of âtemplate<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = boost::math::policies::policy<boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]â 1776 | ibeta(RT1 a, RT2 b, RT3 x, const Policy&) | ^~~~~ /usr/include/boost/math/distributions/binomial.hpp:651:21: required from âRealType boost::math::cdf(const complemented2_type<binomial_distribution<RealType, Policy>, RealType>&) [with RealType = double; Policy = policies::policy<policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]â 651 | return ibeta(k + 1, n - k, p, Policy()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/distributions/detail/derived_accessors.hpp:155:14: required from âtypename Distribution::value_type boost::math::cdf(const complemented2_type<Dist, RealType>&) [with Distribution = binomial_distribution<>; RealType = int; typename Distribution::value_type = double]â 155 | return cdf(complement(c.dist, static_cast<value_type>(c.param))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/alignment/alignment.cpp:4604:23: required from here 4604 | pvalue_binom = cdf(complement(binom, significant_pairs-1)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/promotion.hpp:105:16: error: no type named âtypeâ in âstruct boost::math::tools::pa2_integral_already_removed<double, double, true>â 105 | using type = typename pa2_integral_already_removed< | ^~~~ /usr/include/boost/math/distributions/binomial.hpp: In instantiation of âRealType boost::math::cdf(const complemented2_type<binomial_distribution<RealType, Policy>, RealType>&) [with RealType = double; Policy = policies::policy<policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>]â: /usr/include/boost/math/distributions/detail/derived_accessors.hpp:155:14: required from âtypename Distribution::value_type boost::math::cdf(const complemented2_type<Dist, RealType>&) [with Distribution = binomial_distribution<>; RealType = int; typename Distribution::value_type = double]â 155 | return cdf(complement(c.dist, static_cast<value_type>(c.param))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/alignment/alignment.cpp:4604:23: required from here 4604 | pvalue_binom = cdf(complement(binom, significant_pairs-1)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/distributions/binomial.hpp:651:21: error: no matching function for call to âibeta(double, double, double&, boost::math::policies::policy<boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>)â 651 | return ibeta(k + 1, n - k, p, Policy()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/distributions/binomial.hpp:651:21: note: there are 2 candidates /usr/include/boost/math/special_functions/beta.hpp:1792:4: note: candidate 1: âtemplate<class RT1, class RT2, class RT3> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta(RT1, RT2, RT3)â 1792 | ibeta(RT1 a, RT2 b, RT3 x) | ^~~~~ /usr/include/boost/math/special_functions/beta.hpp:1792:4: note: candidate expects 3 arguments, 4 provided /usr/include/boost/math/special_functions/beta.hpp:1776:4: note: candidate 2: âtemplate<class RT1, class RT2, class RT3, class Policy> boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta(RT1, RT2, RT3, const Policy&)â 1776 | ibeta(RT1 a, RT2 b, RT3 x, const Policy&) | ^~~~~ /usr/include/boost/math/special_functions/beta.hpp:1776:4: note: substitution of deduced template arguments resulted in errors seen above [ 60%] Building CXX object yaml-cpp/CMakeFiles/yaml-cpp.dir/src/simplekey.cpp.o cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DYAML_CPP_NO_CONTRIB -D_USE_PTHREADS -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/yaml-cpp/include -I/<<PKGBUILDDIR>>/build.omp -I/<<PKGBUILDDIR>>/yaml-cpp/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -std=gnu++11 -I/usr/include/eigen3 -I/usr/include -D__SSE3 -msse3 -MD -MT yaml-cpp/CMakeFiles/yaml-cpp.dir/src/simplekey.cpp.o -MF CMakeFiles/yaml-cpp.dir/src/simplekey.cpp.o.d -o CMakeFiles/yaml-cpp.dir/src/simplekey.cpp.o -c /<<PKGBUILDDIR>>/yaml-cpp/src/simplekey.cpp make[4]: *** [alignment/CMakeFiles/alignment.dir/build.make:96: alignment/CMakeFiles/alignment.dir/alignment.cpp.o] Error 1 make[4]: Leaving directory '/<<PKGBUILDDIR>>/build.omp' make[3]: *** [CMakeFiles/Makefile2:1147: alignment/CMakeFiles/alignment.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 60%] Building CXX object yaml-cpp/CMakeFiles/yaml-cpp.dir/src/singledocparser.cpp.o cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DYAML_CPP_NO_CONTRIB -D_USE_PTHREADS -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/yaml-cpp/include -I/<<PKGBUILDDIR>>/build.omp -I/<<PKGBUILDDIR>>/yaml-cpp/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -std=gnu++11 -I/usr/include/eigen3 -I/usr/include -D__SSE3 -msse3 -MD -MT yaml-cpp/CMakeFiles/yaml-cpp.dir/src/singledocparser.cpp.o -MF CMakeFiles/yaml-cpp.dir/src/singledocparser.cpp.o.d -o CMakeFiles/yaml-cpp.dir/src/singledocparser.cpp.o -c /<<PKGBUILDDIR>>/yaml-cpp/src/singledocparser.cpp [ 61%] Building CXX object yaml-cpp/CMakeFiles/yaml-cpp.dir/src/stream.cpp.o cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DYAML_CPP_NO_CONTRIB -D_USE_PTHREADS -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/yaml-cpp/include -I/<<PKGBUILDDIR>>/build.omp -I/<<PKGBUILDDIR>>/yaml-cpp/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -std=gnu++11 -I/usr/include/eigen3 -I/usr/include -D__SSE3 -msse3 -MD -MT yaml-cpp/CMakeFiles/yaml-cpp.dir/src/stream.cpp.o -MF CMakeFiles/yaml-cpp.dir/src/stream.cpp.o.d -o CMakeFiles/yaml-cpp.dir/src/stream.cpp.o -c /<<PKGBUILDDIR>>/yaml-cpp/src/stream.cpp [ 61%] Building CXX object yaml-cpp/CMakeFiles/yaml-cpp.dir/src/tag.cpp.o cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/c++ -DIQTREE_TERRAPHAST -DIQ_TREE -DUSE_BOOST -DUSE_BOOSTER -DYAML_CPP_NO_CONTRIB -D_USE_PTHREADS -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/yaml-cpp/include -I/<<PKGBUILDDIR>>/build.omp -I/<<PKGBUILDDIR>>/yaml-cpp/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fopenmp -pthread -std=gnu++11 -I/usr/include/eigen3 -I/usr/include -D__SSE3 -msse3 -MD -MT yaml-cpp/CMakeFiles/yaml-cpp.dir/src/tag.cpp.o -MF CMakeFiles/yaml-cpp.dir/src/tag.cpp.o.d -o CMakeFiles/yaml-cpp.dir/src/tag.cpp.o -c /<<PKGBUILDDIR>>/yaml-cpp/src/tag.cpp [ 62%] Linking CXX static library libyaml-cpp.a cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/cmake -P CMakeFiles/yaml-cpp.dir/cmake_clean_target.cmake cd /<<PKGBUILDDIR>>/build.omp/yaml-cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/yaml-cpp.dir/link.txt --verbose=1 /usr/bin/ar qc libyaml-cpp.a "CMakeFiles/yaml-cpp.dir/src/bi [too-long-redacted] les/yaml-cpp.dir/src/tag.cpp.o" /usr/bin/ranlib libyaml-cpp.a make[4]: Leaving directory '/<<PKGBUILDDIR>>/build.omp' [ 62%] Built target yaml-cpp make[3]: Leaving directory '/<<PKGBUILDDIR>>/build.omp' make[2]: *** [Makefile:159: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/build.omp' dh_auto_build: error: cd build.omp && make -j2 INSTALL="install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:31: dh_auto_build_omp] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:12: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
