Package: src:ncbi-blast+ Version: 2.17.0+ds-6 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202603/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:ncbi-blast+, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --sourcedirectory=c++ --with-autoreconf dh_auto_clean -O--sourcedirectory=c\+\+ -O--with-autoreconf dh_autoreconf_clean -O--sourcedirectory=c\+\+ -O--with-autoreconf debian/rules override_dh_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' cp c++/src/util/lmdb/Makefile.orig c++/src/util/lmdb/Makefile.orig.save cp c++/src/util/lmdbxx/Makefile.orig c++/src/util/lmdbxx/Makefile.orig.save cp c++/src/util/lmdbxx/lmdb++.h.orig c++/src/util/lmdbxx/lmdb++.h.orig.save cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ [... snipped ...] make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo15634 APP_PROJ=tax4blast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=tax4blast /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/demo/tax4blast.cpp -o tax4blast.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tax4blast.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lsqlitewrapp -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lsqlite3 -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o tax4blast /bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f tax4blast /<<PKGBUILDDIR>>/c++/BUILD/bin /bin/ln -f tax4blast /<<PKGBUILDDIR>>/c++/BUILD/bin/tax4blast make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo15634 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test' /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function âvoid CSeqDBPerfApp::x_UpdateMemoryUsage(int)â: /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:23: warning: âbool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)â is deprecated [-Wdeprecated-declarations] 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36: /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_system.hpp:477:13: note: declared here 477 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); | ^~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function âint CSeqDBPerfApp::x_ScanDatabase()â: /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:154:31: warning: comparison of integer expressions of different signedness: âssize_tâ {aka âlong intâ} and âstd::vector<int>::size_typeâ {aka âlong unsigned intâ} [-Wsign-compare] 154 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o seqdb_perf /bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /<<PKGBUILDDIR>>/c++/BUILD/bin /bin/ln -f seqdb_perf /<<PKGBUILDDIR>>/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo15634 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -Dmake[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o /usr/bin/g++ -std=gnu++20 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/<<PKGBUILDDIR>>/c++/BUILD/lib -L/<<PKGBUILDDIR>>/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lsqlite3 -llmdb -lpthread -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -o writedb_lmdb_unit_test /bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin /bin/ln -f writedb_lmdb_unit_test /<<PKGBUILDDIR>>/c++/BUILD/bin/writedb_lmdb_unit_test make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make --jobserver-auth=fifo:/tmp/GMfifo15634 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp: In member function âbool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, int, const std::vector<int>&, const std::vector<int>&, const std::vector<bool>&, int)â: /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: âintâ and âstd::vector<bool>::size_typeâ {aka âlong unsigned intâ} [-Wsign-compare] 259 | for (int j = i + 1; j < spans.size(); j++) | ~~^~~~~~~~~~~~~~ In file included from /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::EmptyBioseq::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::DuplicateId::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::MismatchedDb_Bioseq::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In function âvoid writedb::RegisterTooManyVariantsOfSameMaskingAlgorithm(ncbi::objects::EBlast_filter_program, size_t)â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::DuplicateAlgoId::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::TooManyAlgoId::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::UndefinedAlgoID::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::MaskDataBoundsError::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::InvalidAliasFileGeneration_NonExistentDb::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::InvalidAliasFileGeneration_NonExistentDbAggregation::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::InvalidAliasFileGeneration_NonExistentMultiVolDbAggregation::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::InvalidAliasFileGeneration_NoGisInBlastDB::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::CBuildDatabase_WriteToInvalidPathWindows::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function âvoid writedb::CBuildDatabase_WriteToInvalidPathUnix::test_method()â: /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:142:42: error: âdummy_condâ is not a member of âboost::test_tools::tt_detailâ 142 | } while( ::boost::test_tools::tt_detail::dummy_cond() ) \ | ^~~~~~~~~~ /<<PKGBUILDDIR>>/c++/include/corelib/test_boost.hpp:247:5: note: in expansion of macro âBOOST_CHECK_THROW_IMPL_EXâ 247 | BOOST_CHECK_THROW_IMPL_EX( S, E, P, affix, TL, ) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro âBOOST_CHECK_THROW_IMPLâ 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_iterator.h:78, from /usr/include/c++/15/bits/stl_algobase.h:67, from /usr/include/c++/15/algorithm:62, from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistl.hpp:180, from /<<PKGBUILDDIR>>/c++/include/corelib/ncbi_limits.hpp:61, from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:38, from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37, from /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:32: In function âconstexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = int; _Args = {const int&}]â, inlined from âstatic constexpr void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]â at /usr/include/c++/15/bits/alloc_traits.h:676:21, inlined from âconstexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; _Alloc = std::allocator<int>]â at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from âconstexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = int; _Alloc = std::allocator<int>]â at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from âvoid ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector<int>&, std::vector<int>&, std::vector<bool>&)â at /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:221:21: /usr/include/c++/15/bits/stl_construct.h:110:16: warning: âstartâ may be used uninitialized [-Wmaybe-uninitialized] 110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp: In member function âvoid ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector<int>&, std::vector<int>&, std::vector<bool>&)â: /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:211:9: note: âstartâ was declared here 211 | int start, stop; | ^~~~~ In function âconstexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = int; _Args = {const int&}]â, inlined from âstatic constexpr void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = int; _Args = {const int&}; _Tp = int]â at /usr/include/c++/15/bits/alloc_traits.h:676:21, inlined from âconstexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const int&}; _Tp = int; _Alloc = std::allocator<int>]â at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from âconstexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = int; _Alloc = std::allocator<int>]â at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from âvoid ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector<int>&, std::vector<int>&, std::vector<bool>&)â at /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:222:20: /usr/include/c++/15/bits/stl_construct.h:110:16: warning: âstopâ may be used uninitialized [-Wmaybe-uninitialized] 110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp: In member function âvoid ncbi::objects::edit::CFindITSParser::GetSpan(const std::string&, std::vector<int>&, std::vector<int>&, std::vector<bool>&)â: /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp:211:16: note: âstopâ was declared here 211 | int start, stop; | ^~~~ make[5]: *** [/<<PKGBUILDDIR>>/c++/BUILD/build/Makefile.rules:103: writedb_unit_test.o] Error 1 make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /<<PKGBUILDDIR>>/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /<<PKGBUILDDIR>>/c++/BUILD/bin/run_with_lock: Unable to rename log file make_writedb_unit_test.loFAILED: src/objtools/blast/seqdb_writer/unit_test/Makefile.writedb_unit_test.app g.new: No such file or directory. make[5]: Entering directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /bin/rm -f writedb_unit_test .writedb_unit_test.stamp make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: *** [/<<PKGBUILDDIR>>/c++/src/build-system/Makefile.meta_l:337: all.nonusr] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[3]: *** [Makefile.flat:3486: writedb_unit_test.exe.real] Error 2 make[3]: *** Waiting for unfinished jobs.... /<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp: In function âncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, const std::string&, ncbi::SIZE_TYPE, bool, bool)â: /<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: âstatic ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)â is deprecated [-Wdeprecated-declarations] 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<<PKGBUILDDIR>>/c++/include/corelib/ncbistd.hpp:37, from /<<PKGBUILDDIR>>/c++/include/objtools/edit/parse_text_options.hpp:34, from /<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp:33: /<<PKGBUILDDIR>>/c++/include/corelib/ncbistr.hpp:5470:11: note: declared here 5470 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ _LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/eutils_updater.cpp -o eutils_updater.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/bui/<<PKGBUILDDIR>>/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: âstd::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)â defined but not used [-Wunused-function] 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) | ^~~~~~~~~~~~~~~~~~~~~~~~ ld/ncbi-blast+-shRcBS/ncbi-blast+-2.17.0+ds/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /usr/bin/g++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<<PKGBUILDDIR>>/c++/BUILD/inc -I/<<PKGBUILDDIR>>/c++/include /<<PKGBUILDDIR>>/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o /bin/rm -f libxobjedit.so .libxobjedit.so.stamp /usr/bin/g++ -std=gnu++20 -shared -o libxobjedit.so -Wl,-r [too-long-redacted] -lxutil -lxncbi -lm -lpthread /bin/bash /<<PKGBUILDDIR>>/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.so /<<PKGBUILDDIR>>/c++/BUILD/lib /bin/ln -f libxobjedit.so /<<PKGBUILDDIR>>/c++/BUILD/lib/libxobjedit.so /bin/ln -f .xobjedit.dep /<<PKGBUILDDIR>>/c++/BUILD/status/.xobjedit.dep make[5]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit' make[4]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build/objtools/edit' make[3]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build' make[2]: *** [Makefile.flat:442: ptb_all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/c++/BUILD/build' make[1]: *** [debian/rules:113: override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:221: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
