Bug#1140389: transition: hdf5

[Gilles Filippini]

Hi Emilio,

Emilio Pozuelo Monfort a écrit le 03/08/2026 à 17:33 :

Control: tags -1 confirmed

On 19/06/2026 15:25, Gilles Filippini wrote:

Package: release.debian.org
Severity: normal
User: release.debian....@packages.debian.org
Usertags: transition



Reverse dependencies status:

* 154 total reverse dependencies
* 118 checked OK
* 7 not in testing (FTBFS in unstable)
     dmrgpp                         KO # FTBFS - Not in testing
     openms                         KO # FTBFS - Not in testing
     ufo-filters                    KO # FTBFS - Not in testing
     pyhst2                         KO # FTBFS - Not in testing
     r-bioc-ioniser                 KO # FTBFS - Not in testing
     siconos                        KO # FTBFS - Not in testing
     r-bioc-gsva                    KO # FTBFS - Not in testing
* 17 bugs opened with attached patch

* 4 bugs opened with no fix yet

I hereby request a transition slot for hdf5 2.1.0 currently in experimental.      gmtsar                         OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139600      gwyddion                       OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139602      h5py                           OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139604      libtrexio                      OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139605      libvbz-hdf-plugin              OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139606      mapsembler2                    OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139607      satdump                        OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139608      slurm-wlm                      OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139609      slurm-wlm-contrib              OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139612      unifrac-tools                  OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139615      freefem++                      OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139617      libminc                        OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139618      scilab                         OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139619      dolfin                         OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139620      cctbx                          OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1140089      insighttoolkit5                OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139623      silx                           OK # Patch - https:// bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139569      haskell-hdf5                   KO # https://bugs.debian.org/cgi- bin/bugreport.cgi?bug=1139497      r-cran-hdf5r                   KO # https://bugs.debian.org/cgi- bin/bugreport.cgi?bug=1139545      silo-llnl                      KO # https://bugs.debian.org/cgi- bin/bugreport.cgi?bug=1139553      xmds2                          KO # https://bugs.debian.org/cgi- bin/bugreport.cgi?bug=1139554

* 1 RM bug for a package not suitable for unstable anymore

     med-fichier                    KO https://bugs.debian.org/cgi- bin/bugreport.cgi?bug=1139324

* 7 not checked yet because of a failing build-dependency
     hkl                            KO (haskell-hdf5)
     r-bioc-rhdf5                   KO (r-bioc-rhdf5filters)
     r-bioc-hdf5array               KO (r-bioc-rhdf5)
     r-bioc-alabaster.matrix        KO (r-bioc-rhdf5)
     r-bioc-bsseq                   KO (r-bioc-rhdf5)
     r-bioc-dropletutils            KO (r-bioc-hdf5array)
     r-bioc-mofa2                   KO (r-bioc-rhdf5)

I've set the usertag "hdf5-2.1.0-transition" with user "p...@debian.org"
to track the related bugs.

https://bugs.debian.org/cgi-bin/pkgreport.cgi? users=p...@debian.org;tag=hdf5-2.1.0-transition

Please go ahead and bump the severity of the remaining bugs to serious.

Uploaded!

Thanks,
_g.

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