Package: wnpp Severity: wishlist X-Debbugs-Cc: [email protected] Subject: ITP: lsd2 -- least-squares method to estimate rates and dates from phylogenies Package: wnpp Owner: Andreas Tille <[email protected]> Severity: wishlist
* Package name : lsd2 Version : 1.9.9 Upstream Author : Thu-Hien To * URL : https://github.com/tothuhien/lsd2 * License : GPL-3+ Programming Lang: C Description : least-squares method to estimate rates and dates from phylogenies LSD2 (Least-Squares Dating) infers substitution rates and node dates on a fixed phylogenetic tree topology using least-squares criteria. . Features include: * rooted and unrooted input trees, with or without outgroups; * flexible tip/internal-node date constraints (fixed dates, bounds, or intervals), including trees with only partially known dates; * multiple substitution rates via user-defined tree partitions; * confidence interval estimation via parametric bootstrap; * detection and removal of outlier tips/dates. . LSD2 is also integrated as a library into IQ-TREE for divergence-time estimation. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/lsd2
