I found some lines in dmesg that might be related to the problem:

CPI: PM-Timer IO Port: 0x4008
time.c: Using 3.579545 MHz WALL PM GTOD PIT/TSC timer.
time.c: Detected 1794.962 MHz processor.
Calibrating delay using timer specific routine.. 3593.32 BogoMIPS
(lpj=7186655)
Using local APIC timer interrupts.
Detected 12.465 MHz APIC timer.
Real Time Clock Driver v1.12ac
Your time source seems to be instable or some driver is hogging
interupts



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