Package: imagej Version: 1.43g-1 Severity: important Tags: patch When java-gcj-compat is the only java version installed on the system the application will not run. It fails with message /usr/bin/imagej: line 420: //bin/java: No such file or directory. This is because of the JAVA_HOME hack introduced inversion 1.43b-1.
When the correct path is specified it still will not run. It crashes with error: (lucid32)ma...@laptop:~/dev/submitted/imagej$ imagej Open other images in this ImageJ panel as follows: imagej -p 1 <image1> [<image2> ... <imageN>] Exception in thread "main" java.lang.NullPointerException at java.awt.Component.setDropTarget(libgcj.so.10) at ij.plugin.DragAndDrop.run(DragAndDrop.java:28) at ij.IJ.runPlugIn(IJ.java:152) at ij.IJ.runPlugIn(IJ.java:135) at ij.ImageJ.<init>(ImageJ.java:184) at ij.ImageJ.main(ImageJ.java:554) These errors can be corrected by depending on openjdk-6-jre and reverting the JAVA_HOME hack to what it used to be. I have attached a patch to correct these problems. -- System Information: Debian Release: squeeze/sid APT prefers karmic-updates APT policy: (500, 'karmic-updates'), (500, 'karmic-security'), (500, 'karmic-proposed'), (500, 'karmic-backports'), (500, 'karmic') Architecture: amd64 (x86_64) Kernel: Linux 2.6.31-15-generic (SMP w/2 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages imagej depends on: ii gcj-4.4-jre [java2-r 4.4.1-5ubuntu2 Java runtime environment using GIJ ii gcj-jre [java2-runti 4:4.4.1-1ubuntu2 Java runtime environment using GIJ ii openjdk-6-jre [java2 6b16-1.6.1-3ubuntu1 OpenJDK Java runtime, using Hotspo ii sun-java6-jre [java2 6-15-1 Sun Java(TM) Runtime Environment ( imagej recommends no packages. Versions of packages imagej suggests: ii gcj-4.4-jre-headless [j 4.4.1-5ubuntu2 Java runtime environment using GIJ ii gcj-jre-headless [java- 4:4.4.1-1ubuntu2 Java runtime environment using GIJ ii gij-4.3 [java-virtual-m 4.3.4-4ubuntu1 The GNU Java bytecode interpreter ii sun-java6-jre [java-vir 6-15-1 Sun Java(TM) Runtime Environment ( -- no debconf information
diff -u imagej-1.43k/debian/control imagej-1.43k/debian/control --- imagej-1.43k/debian/control +++ imagej-1.43k/debian/control @@ -13,7 +13,7 @@ Package: imagej Architecture: all -Depends: ${java:Depends}, ${misc:Depends}, java-gcj-compat | java2-runtime, +Depends: ${java:Depends}, ${misc:Depends}, openjdk-6-jre | java2-runtime Suggests: java-virtual-machine Description: Image processing program inspired by NIH Image for the Macintosh It can display, edit, analyze, process, save and print 8-bit, 16-bit and diff -u imagej-1.43k/debian/imagej.sh imagej-1.43k/debian/imagej.sh --- imagej-1.43k/debian/imagej.sh +++ imagej-1.43k/debian/imagej.sh @@ -26,9 +26,7 @@ ##################### DEFINE JAVA_HOME ##################### if [ -z "$JAVA_HOME" ] ; then - # This does not work see #505315 - # JAVA_HOME=$(/usr/sbin/update-java-alternatives -l | head -1 | cut -d' ' -f 3) - JAVA_HOME=$(dirname $(dirname $(dirname $(readlink /etc/alternatives/java)))) + JAVA_HOME=$(/usr/sbin/update-java-alternatives -l | head -1 | cut -d' ' -f 3) fi ##################### CREATE THE RIGHT ENVIRONMENT #####################