I had the same problem, that certs could not be deleted on Java based
cards, a Java Card Gemalto TOP IM FIPS CY2 (Cyberflex Access 64k v2)

This is fixed in the latest release of OpenSC, 0.11.13:
http://www.opensc-project.org/files/opensc/opensc-0.11.13.tar.gz

For details, see:
http://thread.gmane.org/gmane.comp.encryption.opensc.user/3471

The bug probably also affects --update-certificate as the permissions
are incorrectly computed, so the suggested workaround probably doesn't
help (I haven't tried, though)

So I would be glad if 0.11.13 would make it into debian squeeze!

Thanks, Ralf
-- 
Dr. Ralf Schlatterbeck                  Tel:   +43/2243/26465-16
Open Source Consulting                  Fax:   +43/2243/26465-23
Reichergasse 131                        www:   http://www.runtux.com
A-3411 Weidling                         email: off...@runtux.com
osAlliance member                       email: r...@osalliance.com



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