Package: python-rpy2
Version: 2.1.1-1
Severity: normal
There are no files in
/usr/lib/python2.5/site-packages
because compilation fails, as checked by
apt-get -b source python-rpy2
with following output
....
for python in python2.5 python2.6; \
do $python setup.py install --root=debian/python-rpy2; \
done
running install
running build
running build_py
running build_ext
building 'rpy2.rinterface.rinterface' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall
-Wstrict-prototypes -g -O2 -fPIC -DR_INTERFACE_PTRS=1
-DHAVE_POSIX_SIGJMP=1 -DCSTACK_DEFNS=1 -DRIF_HAS_RSIGHAND=1
-Irpy/rinterface -I/usr/include/python2.5 -I/usr/share/R/include -c
rpy/rinterface/rinterface.c -o
build/temp.linux-x86_64-2.5/rpy/rinterface/rinterface.o
-L/usr/lib64/R/lib -lR -llapack -lblas
In file included from /usr/include/python2.5/Python.h:8,
from rpy/rinterface/rinterface.c:55:
/usr/include/python2.5/pyconfig.h:970:1: warning: "_POSIX_C_SOURCE"
redefined
In file included from /usr/include/signal.h:29,
from rpy/rinterface/rinterface.c:51:
/usr/include/features.h:210:1: warning: this is the location of the
previous definition
In file included from rpy/rinterface/rinterface.c:74:
/usr/share/R/include/R_ext/Rdynload.h:26: warning: function declaration
isn’t a prototype
In file included from rpy/rinterface/rinterface.c:100:
rpy/rinterface/na_values.c: In function ‘NAInteger_tp_new’:
rpy/rinterface/na_values.c:179: warning: implicit declaration of
function ‘Py_SIZE’
rpy/rinterface/na_values.c:188: error: lvalue required as left operand
of assignment
In file included from rpy/rinterface/rinterface.c:105:
rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’:
rpy/rinterface/sequence.c:447: warning: unused variable ‘sexp_item’
rpy/rinterface/sequence.c:447: warning: unused variable ‘tmp’
rpy/rinterface/sequence.c:446: warning: unused variable ‘vs’
rpy/rinterface/sequence.c:386: warning: unused variable ‘self_typeof’
rpy/rinterface/rinterface.c: In function ‘EmbeddedR_end’:
rpy/rinterface/rinterface.c:1112: warning: unused variable ‘str’
error: command 'gcc' failed with exit status 1
....
In the following python2.6 modules get compiled without problem into
/usr/lib/python2.6/dist-packages/rpy2
Thanks
Erwin
-- System Information:
Debian Release: squeeze/sid
APT prefers testing
APT policy: (900, 'testing'), (300, 'stable'), (100, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.32-3-amd64 (SMP w/2 CPU cores)
Locale: LANG=de_AT.UTF-8, LC_CTYPE=de_AT.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages python-rpy2 depends on:
ii libc6 2.10.2-6 Embedded GNU C Library: Shared lib
ii python 2.5.4-9 An interactive high-level object-o
ii python-central 0.6.14+nmu2 register and build utility for Pyt
ii python-fann [python] 20091015-1 Package created with checkinstall
ii python-numpy 1:1.3.0-3+b1 Numerical Python adds a fast array
ii r-base-core 2.11.0-1 GNU R core of statistical computat
python-rpy2 recommends no packages.
Versions of packages python-rpy2 suggests:
pn python-rpy-docs <none> (no description available)
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