On Fri, 23 Dec 2011, Charles Plessy wrote: > here is a patch proposed by a Debian user on our bug tracker, that prevents > samtools mpileup to crash when a read is aligned outside of the reference. > > Please consider including it to your next release, and do not hesitate to send > us comments if there are potential problems with this patch. > [...] > > + fprintf(stderr,"[%s] Skipping because %d is outside of %d > > [ref:%s]\n",__func__,b->core.pos,ma->ref_len,ma->ref_id);
This should actually be [ref:%d]; my mistake. Don Armstrong -- A Democracy lead by politicians and political parties, fails. http://www.donarmstrong.com http://rzlab.ucr.edu -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
