Your message dated Wed, 17 Oct 2007 07:47:02 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#429480: fixed in clustalw 1.83-3
has caused the attached Bug report to be marked as done.
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--- Begin Message ---
Package: clustalx
Version: 1.83-1.2
The programm 'clustalx' terminates with 'Segmentation fault' soon after
starting when used together with 'lesstif2=1:0.95.0-2'.
The error occurs on a system running Debian/i386/testing. The error
occurs with the following packages installed:
||/ Name Version Beschreibung
+++-======================-======================-============================================================
ii clustalx 1.83-1.2 [Biology] GUI for clustalw
ii lesstif2 1:0.95.0-2 OSF/Motif 2.1 implementation
released under LGPL
ii lesstif2-dev 1:0.95.0-2 development library and
header files for LessTif 2.1
ii libvibrant6-dev 6.1.20061015-1 NCBI libraries for graphic
biology applications (development
ii libvibrant6a 6.1.20061015-1 NCBI libraries for graphic
biology applications
ii ncbi-data 6.1.20061015-1 Platform-independent data for
the NCBI toolkit
ii ncbi-tools-bin 6.1.20061015-1 NCBI libraries for biology
applications (text-based utilitie
ii ncbi-tools-x11 6.1.20061015-1 NCBI libraries for biology
applications (X-based utilities)
If I start clustalx, I get a segmentation fault immediately after starting the
programm:
[EMAIL PROTECTED]: /usr/bin/clustalx
Segmentation fault
If I downgrade 'lesstif2' to the version included in 'Debian/i386/stable'
(etch), clustalx
runs normally.
apt-get --reinstall install 'lesstif2=1:0.94.4-2'
||/ Name Version Beschreibung
+++-======================-======================-============================================================
ii clustalx 1.83-1.2 [Biology] GUI for clustalw
ii lesstif2 1:0.94.4-2 OSF/Motif 2.1 implementation
released under LGPL
ii lesstif2-dev 1:0.95.0-2 development library and
header files for LessTif 2.1
ii libvibrant6-dev 6.1.20061015-1 NCBI libraries for graphic
biology applications (development
ii libvibrant6a 6.1.20061015-1 NCBI libraries for graphic
biology applications
ii ncbi-data 6.1.20061015-1 Platform-independent data for
the NCBI toolkit
ii ncbi-tools-bin 6.1.20061015-1 NCBI libraries for biology
applications (text-based utilitie
ii ncbi-tools-x11 6.1.20061015-1 NCBI libraries for biology
applications (X-based utilities)
I am not sure if this bug has to be assigned to clustalx or to lesstif2.
I have just run another quick test which shows that also the programm 'sequin'
from
package 'ncbi-tools-x11' terminates with 'Segmentation fault' when
'lesstif2=1:0.95.0-2'
is installed. 'clustalx' and 'sequin' both depend on 'libvibrant6a' and
on 'lesstif2'.
--
Peter
-------------------------------------------------------------------
Peter Slickers
Clondiag Chip Technologies
Löbstedter Str. 105
07749 Jena
Germany
-------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: clustalw
Source-Version: 1.83-3
We believe that the bug you reported is fixed in the latest version of
clustalw, which is due to be installed in the Debian FTP archive:
clustalw_1.83-3.diff.gz
to pool/non-free/c/clustalw/clustalw_1.83-3.diff.gz
clustalw_1.83-3.dsc
to pool/non-free/c/clustalw/clustalw_1.83-3.dsc
clustalw_1.83-3_i386.deb
to pool/non-free/c/clustalw/clustalw_1.83-3_i386.deb
clustalx_1.83-3_i386.deb
to pool/non-free/c/clustalw/clustalx_1.83-3_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[EMAIL PROTECTED]> (supplier of updated clustalw package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Wed, 12 Sep 2007 16:50:37 +0900
Source: clustalw
Binary: clustalx clustalw
Architecture: source i386
Version: 1.83-3
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Charles Plessy <[EMAIL PROTECTED]>
Description:
clustalw - Global multiple nucleotide or peptide sequence alignment
clustalx - GUI for clustalw
Closes: 378483 429480
Changes:
clustalw (1.83-3) unstable; urgency=low
.
[ Nelson A. de Oliveira ]
* Added watch file, debian/rules get-orig-source
should be used to download the orig.tar.gz, not uscan.
.
[ Charles Plessy ]
* Build-depend on libncbi6-dev instead of ncbi-tools6-dev.
.
[ Steffen Moeller ]
* Added dependency to later version lesstif2 (Closes:#429480).
* The recompilation against libvibrant6 was probably
already fixed in an earlier version, certainly it is now
(Closes:#378483).
Files:
0d8d410958b12f502db584a298a015d9 925 non-free/science optional
clustalw_1.83-3.dsc
e6206a2b502a3150ae1da4d183bf67d6 54978 non-free/science optional
clustalw_1.83-3.diff.gz
f01124711db8b4ae51b7957902a3e681 168846 non-free/science optional
clustalw_1.83-3_i386.deb
e8e9bf5286bd631a37a9c49bca4818a5 228044 non-free/science optional
clustalx_1.83-3_i386.deb
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--- End Message ---
