Your message dated Tue, 08 Apr 2008 12:02:45 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#474416: fixed in libgenome 1.3.0-5
has caused the Debian Bug report #474416,
regarding libgenome - FTBFS: error: 'strchr' was not declared in this scope
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
474416: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=474416
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: libgenome
Version: 1.3.0-2
Severity: serious
There was an error while trying to autobuild your package:
> Automatic build of libgenome_1.3.0-2 on debian-31.osdl.marist.edu by
> sbuild/s390 98
[...]
> g++ -DHAVE_CONFIG_H -I. -I.. -I.. -g -Wall -O2 -c gnFilter.cpp -o gnFilter.o
> >/dev/null 2>&1
> /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I..
> -I.. -g -Wall -O2 -c -o gnCompare.lo gnCompare.cpp
> g++ -DHAVE_CONFIG_H -I. -I.. -I.. -g -Wall -O2 -c gnCompare.cpp -fPIC -DPIC
> -o .libs/gnCompare.o
> In file included from gnCompare.cpp:16:
> ../libGenome/gnCompare.h: In member function 'boolean
> genome::gnCompare::LessThan(gnSeqC, gnSeqC, boolean) const':
> ../libGenome/gnCompare.h:141: warning: array subscript has type 'char'
> ../libGenome/gnCompare.h:141: error: 'strchr' was not declared in this scope
> gnCompare.cpp: In constructor
> 'genome::gnCompare::gnCompare(genome::gnCompare::gnCompareType)':
> gnCompare.cpp:40: warning: array subscript has type 'char'
> gnCompare.cpp:41: warning: array subscript has type 'char'
> gnCompare.cpp:42: warning: array subscript has type 'char'
> gnCompare.cpp:43: warning: array subscript has type 'char'
> gnCompare.cpp: In member function 'boolean
> genome::gnCompare::Contains(gnSeqC, gnSeqC, boolean) const':
> gnCompare.cpp:64: warning: array subscript has type 'char'
> gnCompare.cpp:64: error: 'strchr' was not declared in this scope
> gnCompare.cpp: In constructor 'genome::gnCompare::gnCompare()':
> gnCompare.cpp:85: warning: array subscript has type 'char'
> gnCompare.cpp:86: warning: array subscript has type 'char'
> gnCompare.cpp:87: warning: array subscript has type 'char'
> gnCompare.cpp:88: warning: array subscript has type 'char'
> gnCompare.cpp: In copy constructor 'genome::gnCompare::gnCompare(const
> genome::gnCompare&)':
> gnCompare.cpp:96: warning: array subscript has type 'char'
> gnCompare.cpp:96: warning: array subscript has type 'char'
> gnCompare.cpp:96: error: 'strlen' was not declared in this scope
> gnCompare.cpp:97: warning: array subscript has type 'char'
> gnCompare.cpp:97: warning: array subscript has type 'char'
> gnCompare.cpp:97: error: 'strcpy' was not declared in this scope
> gnCompare.cpp:98: warning: array subscript has type 'char'
> gnCompare.cpp:98: warning: array subscript has type 'char'
> gnCompare.cpp:99: warning: array subscript has type 'char'
> gnCompare.cpp:99: warning: array subscript has type 'char'
> gnCompare.cpp: In destructor 'virtual genome::gnCompare::~gnCompare()':
> gnCompare.cpp:105: warning: array subscript has type 'char'
> gnCompare.cpp:106: warning: array subscript has type 'char'
> gnCompare.cpp: In member function 'void
> genome::gnCompare::AddArrayEntry(gnSeqC**, gnSeqC, gnSeqC)':
> gnCompare.cpp:112: warning: array subscript has type 'char'
> gnCompare.cpp:112: error: 'strlen' was not declared in this scope
> gnCompare.cpp:114: warning: array subscript has type 'char'
> gnCompare.cpp:114: error: 'strcpy' was not declared in this scope
> gnCompare.cpp:117: warning: array subscript has type 'char'
> gnCompare.cpp:118: warning: array subscript has type 'char'
> gnCompare.cpp: In member function 'void
> genome::gnCompare::DelArrayEntry(gnSeqC**, gnSeqC, gnSeqC)':
> gnCompare.cpp:123: warning: array subscript has type 'char'
> gnCompare.cpp:123: error: 'strchr' was not declared in this scope
> gnCompare.cpp:132: warning: array subscript has type 'char'
> gnCompare.cpp:132: error: 'strlen' was not declared in this scope
> gnCompare.cpp:136: warning: array subscript has type 'char'
> gnCompare.cpp:137: warning: array subscript has type 'char'
> gnCompare.cpp:139: warning: array subscript has type 'char'
> gnCompare.cpp:140: warning: array subscript has type 'char'
> make[3]: *** [gnCompare.lo] Error 1
> make[3]: Leaving directory `/build/buildd/libgenome-1.3.0/libGenome'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/build/buildd/libgenome-1.3.0'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/build/buildd/libgenome-1.3.0'
> make: *** [debian/stamp-makefile-build] Error 2
> dpkg-buildpackage: failure: debian/rules build gave error exit status 2
> ******************************************************************************
> Build finished at 20080405-0807
> FAILED [dpkg-buildpackage died]
--- End Message ---
--- Begin Message ---
Source: libgenome
Source-Version: 1.3.0-5
We believe that the bug you reported is fixed in the latest version of
libgenome, which is due to be installed in the Debian FTP archive:
libgenome-1.3-1-dev_1.3.0-5_i386.deb
to pool/main/libg/libgenome/libgenome-1.3-1-dev_1.3.0-5_i386.deb
libgenome-1.3-1_1.3.0-5_i386.deb
to pool/main/libg/libgenome/libgenome-1.3-1_1.3.0-5_i386.deb
libgenome_1.3.0-5.diff.gz
to pool/main/libg/libgenome/libgenome_1.3.0-5.diff.gz
libgenome_1.3.0-5.dsc
to pool/main/libg/libgenome/libgenome_1.3.0-5.dsc
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[EMAIL PROTECTED]> (supplier of updated libgenome package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Tue, 08 Apr 2008 13:37:18 +0200
Source: libgenome
Binary: libgenome-1.3-1-dev libgenome-1.3-1
Architecture: source i386
Version: 1.3.0-5
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Andreas Tille <[EMAIL PROTECTED]>
Description:
libgenome-1.3-1 - toolkit for developing bioinformatic related software
libgenome-1.3-1-dev - toolkit for developing bioinformatic related software
Closes: 474416
Changes:
libgenome (1.3.0-5) unstable; urgency=low
.
* Another "#include <cstring>" was obviousely missing. I know
compiled successfully in a g++-4.3 environment which makes me
positive that this finally
Closes: #474416
Files:
3105db01facf1fd458cb9b3771e7e32b 1014 libs optional libgenome_1.3.0-5.dsc
cf4672faa1cd3e9db19e52127601d6de 235819 libs optional libgenome_1.3.0-5.diff.gz
6d1dfcd711b652cea98670a1dca810ae 290376 libdevel optional
libgenome-1.3-1-dev_1.3.0-5_i386.deb
4d61b4962992abf02729f260a77f8f24 169102 libs optional
libgenome-1.3-1_1.3.0-5_i386.deb
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--- End Message ---
