Your message dated Fri, 05 Sep 2008 02:02:06 +0000
with message-id <[EMAIL PROTECTED]>
and subject line Bug#493341: fixed in libtfbs-perl 0.5.svn.20080722-2
has caused the Debian Bug report #493341,
regarding libtfbs-perl - FTBFS: Bioperl does not seem to be installed.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [EMAIL PROTECTED]
immediately.)
--
493341: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=493341
Debian Bug Tracking System
Contact [EMAIL PROTECTED] with problems
--- Begin Message ---
Package: libtfbs-perl
Version: 0.5.svn.20080722-1
Severity: serious
There was an error while trying to autobuild your package:
> Automatic build of libtfbs-perl_0.5.svn.20080722-1 on
> debian-31.osdl.marist.edu by sbuild/s390 98
[...]
> Now at patch nomysqlserver.patch
> touch debian/stamp-patched
> /usr/bin/perl Makefile.PL INSTALLDIRS=vendor
> TFBS installation aborted.
> Please install one or more missing modules before proceeding
>
>
>
> -------------------------------------------------
> WARNING
> -------------------------------------------------
>
> Bioperl does not seem to be installed.
>
> Bioperl 1.0 or newer is unconditionally required by TFBS.
>
> Please install Bioperl BEFORE proceeding with
> TFBS installation. Go to http://bioperl.org for
> information on how to obtain and install it.
>
> -------------------------------------------------
>
> dh_testdir
> # Add commands to compile the package here
> /usr/bin/make OPTIMIZE="-Wall -g -O2" LD_RUN_PATH=""
> make[1]: Entering directory `/build/buildd/libtfbs-perl-0.5.svn.20080722'
> make[1]: *** No targets specified and no makefile found. Stop.
> make[1]: Leaving directory `/build/buildd/libtfbs-perl-0.5.svn.20080722'
> make: *** [build-stamp] Error 2
> dpkg-buildpackage: failure: debian/rules build gave error exit status 2
> ******************************************************************************
> Build finished at 20080730-1505
> FAILED [dpkg-buildpackage died]
--- End Message ---
--- Begin Message ---
Source: libtfbs-perl
Source-Version: 0.5.svn.20080722-2
We believe that the bug you reported is fixed in the latest version of
libtfbs-perl, which is due to be installed in the Debian FTP archive:
libtfbs-perl_0.5.svn.20080722-2.diff.gz
to pool/main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20080722-2.diff.gz
libtfbs-perl_0.5.svn.20080722-2.dsc
to pool/main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20080722-2.dsc
libtfbs-perl_0.5.svn.20080722-2_amd64.deb
to pool/main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20080722-2_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[EMAIL PROTECTED]> (supplier of updated libtfbs-perl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 11 Aug 2008 13:27:45 +0900
Source: libtfbs-perl
Binary: libtfbs-perl
Architecture: source amd64
Version: 0.5.svn.20080722-2
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <[EMAIL PROTECTED]>
Changed-By: Charles Plessy <[EMAIL PROTECTED]>
Description:
libtfbs-perl - scanning DNA sequence with a position weight matrix
Closes: 493341
Changes:
libtfbs-perl (0.5.svn.20080722-2) unstable; urgency=low
.
* debian/control:
- Added bioperl to the build dependencies (Closes: #493341).
- Dropped quilt build dependency (see below).
- Added myself to the Uploaders field.
- Added `libgd-gd2-perl | libgd-gd2-noxpm-perl' as recommended package.
* debian/compat, debian/control:
- Using debhelper 7.
* debian/rules:
- Refreshed with `dh-make-perl --refresh'.
- Removes /usr/lib/perl5/pwm_searchPFF.c and /usr/lib/perl5/pwm_search.h,
that should not be installed there.
* debian/patches, debian/rules:
- Disabling the MySQL tests with `echo "n" |' instead of patches.
* debian/copyright:
- Converted to machine-readable format.
- Added myself to the Hall of Fame.
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