Your message dated Thu, 16 Apr 2009 15:17:37 +0000
with message-id <e1lutln-0005r9...@ries.debian.org>
and subject line Bug#506009: fixed in maq 0.7.1-2
has caused the Debian Bug report #506009,
regarding maq: gzopen64 implicitly converted to pointer
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
506009: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=506009
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: maq
Version: 0.7.1-1
Severity: serious
Usertags: implicit-pointer-conversion
Our automated buildd log filter[1] detected a problem that is likely to
cause your package to segfault on architectures where the size of a
pointer is greater than the size of an integer, such as ia64 and amd64.
Function `gzopen64' implicitly converted to pointer at fastq2bfq.c:30
Function `gzopen64' implicitly converted to pointer at maqmap_conv.c:57
Function `gzopen64' implicitly converted to pointer at simulate.c:83
Function `gzopen64' implicitly converted to pointer at break_pair.c:16
This is often due to a missing function prototype definition.
For more information, see [2].
Though it is guaranteed that this codepath will cause a segfault on certain
architectures, it is not guaranteed that this codepath would ever be executed
(e.g., if the returned pointer is never dereferenced). However, this bug
does prevent the ia64 buildd from successfully building this package, resulting
in a practical FTBFS issue and warranting the serious severity.
[1] http://people.debian.org/~dannf/check-implicit-pointer-functions
[2] http://wiki.debian.org/ImplicitPointerConversions
--- End Message ---
--- Begin Message ---
Source: maq
Source-Version: 0.7.1-2
We believe that the bug you reported is fixed in the latest version of
maq, which is due to be installed in the Debian FTP archive:
maq_0.7.1-2.diff.gz
to pool/main/m/maq/maq_0.7.1-2.diff.gz
maq_0.7.1-2.dsc
to pool/main/m/maq/maq_0.7.1-2.dsc
maq_0.7.1-2_i386.deb
to pool/main/m/maq/maq_0.7.1-2_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 506...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated maq package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 16 Apr 2009 15:56:09 +0200
Source: maq
Binary: maq
Architecture: source i386
Version: 0.7.1-2
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
maq - maps short fixed-length polymorphic DNA sequence reads to referen
Closes: 506009
Changes:
maq (0.7.1-2) unstable; urgency=low
.
* Enable LARGEFILE64_SOURCE to prevent a problem with zlib on
64bit archs (Thanks to Peter Green <plugw...@p10link.net> for
the patch)
Closes: #506009
* Standards-Version: 3.8.1 (no changes needed)
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Files:
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