Your message dated Tue, 11 May 2010 03:33:39 +0000
with message-id <[email protected]>
and subject line Bug#577898: fixed in nipy 0.1.2+20100505-1
has caused the Debian Bug report #577898,
regarding nipy: FTBFS: ValueError: >>> from numpy import asarray is not a item
name
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
577898: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=577898
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: nipy
Version: 0.1.2+1741-2.2
Severity: serious
Tags: squeeze sid
User: [email protected]
Usertags: qa-ftbfs-20100415 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[1]: Entering directory
> `/build/user-nipy_0.1.2+1741-2.2-amd64-KW7WdU/nipy-0.1.2+1741/doc'
> python ../tools/build_modref_templates.py
> WARNING: Empty - nipy
> WARNING: Empty - nipy.algorithms
> WARNING: Empty - nipy.algorithms.regression
> WARNING: Empty - nipy.algorithms.statistics
> WARNING: Empty - nipy.core
> WARNING: Empty - nipy.core.api
> WARNING: Empty - nipy.core.image
> WARNING: Empty - nipy.core.reference
> WARNING: Empty - nipy.core.transforms
> WARNING: Empty - nipy.io
> WARNING: Empty - nipy.io.api
> WARNING: Empty - nipy.modalities
> WARNING: Empty - nipy.modalities.fmri
> WARNING: Empty - nipy.modalities.fmri.api
> WARNING: Empty - nipy.modalities.fmri.fmristat
> WARNING: Empty - nipy.modalities.fmri.fmristat.api
> WARNING: Empty - nipy.neurospin
> WARNING: Empty - nipy.neurospin.bindings
> WARNING: Empty - nipy.neurospin.clustering
> WARNING: Empty - nipy.neurospin.eda
> WARNING: Empty - nipy.neurospin.glm
> WARNING: Empty - nipy.neurospin.graph
> WARNING: Empty - nipy.neurospin.group
> WARNING: Empty - nipy.neurospin.group.onesample
> WARNING: Empty - nipy.neurospin.group.twosample
> WARNING: Empty - nipy.neurospin.neuro
> WARNING: Empty - nipy.neurospin.neuro.fmri
> WARNING: Empty - nipy.neurospin.registration
> WARNING: Empty - nipy.neurospin.scripts
> WARNING: Empty - nipy.neurospin.scripts.compute_mask_intra
> WARNING: Empty - nipy.neurospin.spatial_models
> WARNING: Empty - nipy.neurospin.utils
> WARNING: Empty - nipy.testing
> WARNING: Empty - nipy.utils
> WARNING: Empty - nipy.version
> 78 files written
> Build API docs finished.
> mkdir -p build/html build/doctrees
> sphinx-build -b html -d build/doctrees . build/html
> Running Sphinx v0.6.5
> WARNING: extension 'ipython_console_highlighting' has no setup() function; is
> it really a Sphinx extension module?
> loading pickled environment... not found
> building [html]: targets for 147 source files that are out of date
> updating environment: 147 added, 0 changed, 0 removed
> reading sources... [ 0%] about
> reading sources... [ 1%] api/generated/gen
> reading sources... [ 2%] api/generated/nipy.algorithms.fwhm
> reading sources... [ 2%] api/generated/nipy.algorithms.interpolation
> reading sources... [ 3%] api/generated/nipy.algorithms.kernel_smooth
> reading sources... [ 4%] api/generated/nipy.algorithms.resample
> reading sources... [ 4%]
> api/generated/nipy.algorithms.statistics.classification
> reading sources... [ 5%] api/generated/nipy.algorithms.statistics.nlsmodel
> reading sources... [ 6%] api/generated/nipy.algorithms.statistics.onesample
> reading sources... [ 6%] api/generated/nipy.algorithms.statistics.regression
> reading sources... [ 7%] api/generated/nipy.algorithms.statistics.rft
> /build/user-nipy_0.1.2+1741-2.2-amd64-KW7WdU/nipy-0.1.2+1741/doc/sphinxext/docscrape.py:117:
> UserWarning: Unknown section Example
> warn("Unknown section %s" % key)
> /build/user-nipy_0.1.2+1741-2.2-amd64-KW7WdU/nipy-0.1.2+1741/doc/sphinxext/docscrape.py:117:
> UserWarning: Unknown section N!
> warn("Unknown section %s" % key)
> reading sources... [ 8%] api/generated/nipy.algorithms.statistics.utils
> /build/user-nipy_0.1.2+1741-2.2-amd64-KW7WdU/nipy-0.1.2+1741/doc/sphinxext/docscrape.py:117:
> UserWarning: Unknown section Inputs:
> warn("Unknown section %s" % key)
> /build/user-nipy_0.1.2+1741-2.2-amd64-KW7WdU/nipy-0.1.2+1741/doc/sphinxext/docscrape.py:117:
> UserWarning: Unknown section Outputs:
> warn("Unknown section %s" % key)
> reading sources... [ 8%] api/generated/nipy.core.image.generators
> reading sources... [ 9%] api/generated/nipy.core.image.image
> reading sources... [ 10%] api/generated/nipy.core.image.image_list
> reading sources... [ 10%] api/generated/nipy.core.image.roi
> reading sources... [ 11%] api/generated/nipy.core.reference.array_coords
> reading sources... [ 12%] api/generated/nipy.core.reference.coordinate_map
> /build/user-nipy_0.1.2+1741-2.2-amd64-KW7WdU/nipy-0.1.2+1741/doc/sphinxext/docscrape.py:117:
> UserWarning: Unknown section Returns:
> warn("Unknown section %s" % key)
> reading sources... [ 12%] api/generated/nipy.core.reference.coordinate_system
> reading sources... [ 13%] api/generated/nipy.core.reference.slices
> reading sources... [ 14%] api/generated/nipy.core.transforms.affines
> reading sources... [ 14%] api/generated/nipy.io.datasource
> reading sources... [ 15%] api/generated/nipy.io.files
> reading sources... [ 16%] api/generated/nipy.io.nifti_ref
> /build/user-nipy_0.1.2+1741-2.2-amd64-KW7WdU/nipy-0.1.2+1741/doc/sphinxext/docscrape.py:117:
> UserWarning: Unknown section Notes:
> warn("Unknown section %s" % key)
> reading sources... [ 17%] api/generated/nipy.io.pyniftiio
> reading sources... [ 17%] api/generated/nipy.modalities.fmri.filters
> reading sources... [ 18%] api/generated/nipy.modalities.fmri.fmri
>
> Exception occurred:
> File
> "/build/user-nipy_0.1.2+1741-2.2-amd64-KW7WdU/nipy-0.1.2+1741/doc/sphinxext/docscrape.py",
> line 208, in parse_item_name
> raise ValueError("%s is not a item name" % text)
> ValueError: >>> from numpy import asarray is not a item name
> The full traceback has been saved in /tmp/sphinx-err-YtDL2h.log, if you want
> to report the issue to the developers.
> Please also report this if it was a user error, so that a better error
> message can be provided next time.
> Either send bugs to the mailing list at
> <http://groups.google.com/group/sphinx-dev/>,
> or report them in the tracker at
> <http://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks!
> make[1]: *** [htmlonly] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2010/04/15/nipy_0.1.2+1741-2.2_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| [email protected] http://www.lucas-nussbaum.net/ |
| jabber: [email protected] GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: nipy
Source-Version: 0.1.2+20100505-1
We believe that the bug you reported is fixed in the latest version of
nipy, which is due to be installed in the Debian FTP archive:
nipy_0.1.2+20100505-1.debian.tar.gz
to main/n/nipy/nipy_0.1.2+20100505-1.debian.tar.gz
nipy_0.1.2+20100505-1.dsc
to main/n/nipy/nipy_0.1.2+20100505-1.dsc
nipy_0.1.2+20100505.orig.tar.gz
to main/n/nipy/nipy_0.1.2+20100505.orig.tar.gz
python-nipy-doc_0.1.2+20100505-1_all.deb
to main/n/nipy/python-nipy-doc_0.1.2+20100505-1_all.deb
python-nipy-lib-dbg_0.1.2+20100505-1_amd64.deb
to main/n/nipy/python-nipy-lib-dbg_0.1.2+20100505-1_amd64.deb
python-nipy-lib_0.1.2+20100505-1_amd64.deb
to main/n/nipy/python-nipy-lib_0.1.2+20100505-1_amd64.deb
python-nipy_0.1.2+20100505-1_all.deb
to main/n/nipy/python-nipy_0.1.2+20100505-1_all.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Yaroslav Halchenko <[email protected]> (supplier of updated nipy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Tue, 04 May 2010 23:01:12 -0400
Source: nipy
Binary: python-nipy python-nipy-lib python-nipy-lib-dbg python-nipy-doc
Architecture: source all amd64
Version: 0.1.2+20100505-1
Distribution: unstable
Urgency: low
Maintainer: NeuroDebian Team <[email protected]>
Changed-By: Yaroslav Halchenko <[email protected]>
Description:
python-nipy - Analysis of structural and functional neuroimaging data
python-nipy-doc - documention and examples for NiPy
python-nipy-lib - Analysis of structural and functional neuroimaging data
python-nipy-lib-dbg - Analysis of structural and functional neuroimaging data
Closes: 562246 567757 577898
Changes:
nipy (0.1.2+20100505-1) unstable; urgency=low
.
* Fresh upstream snapshot (Closes: #577898). Switching from bzr rev to
git dated versioning for nipy for now
* Debian packaging moved to be on top of a newly created
git repository for nipy upstream
* Adhering to a new deb source format 3.0 (quilt)
* Policy compliance to 3.8.4 (no changes due)
* Switching over to NeuroDebian team
* -doc: no pdf's for Documentation (removed texlive,
texlive-latex-extra from Build-Depends) (Closes: #567757)
* Confirming (and refactoring) NMUs from Kumar (THANKS!):
+ As promised, closing the issue with absent i386 builds (Closes: #562246)
+ Adding both PATH= and MPLCONFIGDIR= for building docs
+ Addressed fortran binding issue with patchless solution:
unexport of LDFLAGS in debian/rules which brings -shared back
to game (see #535699 for more information)
Checksums-Sha1:
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nipy_0.1.2+20100505.orig.tar.gz
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nipy_0.1.2+20100505-1.debian.tar.gz
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python-nipy_0.1.2+20100505-1_all.deb
98d0fb302478d158f241093f5049b82b4c4a7d85 10830
python-nipy-doc_0.1.2+20100505-1_all.deb
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python-nipy-lib_0.1.2+20100505-1_amd64.deb
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python-nipy-lib-dbg_0.1.2+20100505-1_amd64.deb
Checksums-Sha256:
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python-nipy_0.1.2+20100505-1_all.deb
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python-nipy-lib-dbg_0.1.2+20100505-1_amd64.deb
Files:
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c262a2576ec8ac5dfe9f606fd1b49285 4736 python extra
nipy_0.1.2+20100505-1.debian.tar.gz
230e9acd301cbfef53c884d3ac1bf94c 1075220 python extra
python-nipy_0.1.2+20100505-1_all.deb
5350a557668bf27054c986832d5192fa 10830 doc extra
python-nipy-doc_0.1.2+20100505-1_all.deb
3c57974e00b068198cdd4741e27592fd 1005924 python extra
python-nipy-lib_0.1.2+20100505-1_amd64.deb
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python-nipy-lib-dbg_0.1.2+20100505-1_amd64.deb
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--- End Message ---
