Your message dated Fri, 01 Apr 2011 05:02:10 +0000
with message-id <e1q5wus-00024z...@franck.debian.org>
and subject line Bug#620269: fixed in r-cran-genabel 1.6-5-1
has caused the Debian Bug report #620269,
regarding r-cran-genabel: FTBFS everywhere: Error : unknown namespace
directive: S4method("[", snp.data)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
620269: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=620269
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-cran-genabel
Version: 1.6-4-1
Severity: serious
Justification: FTBFS
Hi,
your package FTBFS everywhere, example on amd64:
| installing to
/build/buildd-r-cran-genabel_1.6-4-1-i386-F9EQg2/r-cran-genabel-1.6-4/debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/libs
| ** R
| ** data
| ** demo
| ** inst
| ** preparing package for lazy loading
| Error : unknown namespace directive: S4method("[", snp.data)
| ERROR: lazy loading failed for package 'GenABEL'
| * removing
'/build/buildd-r-cran-genabel_1.6-4-1-i386-F9EQg2/r-cran-genabel-1.6-4/debian/r-cran-genabel/usr/lib/R/site-library/GenABEL'
| make: *** [R_any_arch] Error 1
Full build logs:
https://buildd.debian.org/status/package.php?p=r-cran-genabel&suite=sid
KiBi.
--- End Message ---
--- Begin Message ---
Source: r-cran-genabel
Source-Version: 1.6-5-1
We believe that the bug you reported is fixed in the latest version of
r-cran-genabel, which is due to be installed in the Debian FTP archive:
r-cran-genabel_1.6-5-1.debian.tar.gz
to main/r/r-cran-genabel/r-cran-genabel_1.6-5-1.debian.tar.gz
r-cran-genabel_1.6-5-1.dsc
to main/r/r-cran-genabel/r-cran-genabel_1.6-5-1.dsc
r-cran-genabel_1.6-5-1_amd64.deb
to main/r/r-cran-genabel/r-cran-genabel_1.6-5-1_amd64.deb
r-cran-genabel_1.6-5.orig.tar.gz
to main/r/r-cran-genabel/r-cran-genabel_1.6-5.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 620...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <ple...@debian.org> (supplier of updated r-cran-genabel package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 01 Apr 2011 13:46:37 +0900
Source: r-cran-genabel
Binary: r-cran-genabel
Architecture: source amd64
Version: 1.6-5-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Charles Plessy <ple...@debian.org>
Description:
r-cran-genabel - GNU R package for genome-wide SNP association analysis
Closes: 620269
Changes:
r-cran-genabel (1.6-5-1) unstable; urgency=low
.
* New upstream release, buildable with R > 2.12 (closes: #620269).
.
[ Andreas Tille ]
* debian/control:
- added myself to uploaders
- changed section to gnu-r
- Depend on ${R:Depends}
* debian/rules:
- fix permissions of files that should not be executable
- Require a number equal or superior than the R version the package
was built with, using a R:Depends substvar
.
[ Charles Plessy ]
* debian/control:
- Added myself to uploaders.
- Use debhelper 8 (debian/compat).
- Build-depend on R > 2.10 according to DESCRIPTION.
- Replaces r-other-genabel.
- Added Vcs-Browser and Vcs-Svn fields.
- Updated homepage.
* Install CHANGES.LOG as upstream changelog (debian/rules).
* Converted debian/copyright to DEP-5 format.
Checksums-Sha1:
1e4255348e91174583940dc44ac21db02d8dfdc1 2138 r-cran-genabel_1.6-5-1.dsc
2eceb50cd02f132abca590f5a552f79bd6b03547 6666374
r-cran-genabel_1.6-5.orig.tar.gz
e7a3fa6af353f0f80a6bcfe574f587e823d69f57 3042
r-cran-genabel_1.6-5-1.debian.tar.gz
52c944aa87f14832be4f72f4e8073f7b18781ec0 7094076
r-cran-genabel_1.6-5-1_amd64.deb
Checksums-Sha256:
b1f4c46397b1da1b5154ea91dae4097c2439472c544f90b9f35a144536b455ec 2138
r-cran-genabel_1.6-5-1.dsc
a5216280bcb31c4262bb1376428692cebe4cfdbf396b51c95a70782def29f07b 6666374
r-cran-genabel_1.6-5.orig.tar.gz
d2b86929d52c1bb4d77027dff3f1cfbf50ab40b59df072f9da7e66bd029793f7 3042
r-cran-genabel_1.6-5-1.debian.tar.gz
3fafcaf79887fcd001cc6fc4e2faabb43738fc407a4d843ef8683f658187d3ff 7094076
r-cran-genabel_1.6-5-1_amd64.deb
Files:
baddb46f77c45f57b6dd6f6de96dac66 2138 gnu-r optional r-cran-genabel_1.6-5-1.dsc
ed90c86aa48f36451e889acbf5a493c6 6666374 gnu-r optional
r-cran-genabel_1.6-5.orig.tar.gz
fa96d9813b7f68b3fc2901cca6d7f38e 3042 gnu-r optional
r-cran-genabel_1.6-5-1.debian.tar.gz
39a70bcd4257db3fa9a4a96931d51618 7094076 gnu-r optional
r-cran-genabel_1.6-5-1_amd64.deb
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