Source: probalign Version: 1.4-1 Severity: serious Tags: wheezy sid User: [email protected] Usertags: qa-ftbfs-20110502 qa-ftbfs Justification: FTBFS on amd64
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part: > g++ -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc > ComputeAlignment.cc ReadMatrix.cc > In file included from Main.cc:8:0: > SafeVector.h:26:22: error: expected ')' before 'size' > SafeVector.h:27:22: error: expected ')' before 'size' > In file included from MultiSequence.h:18:0, > from Main.cc:9: > Sequence.h: In member function 'SafeVector<int>* Sequence::GetMapping() > const': > Sequence.h:392:52: error: no matching function for call to > 'SafeVector<int>::SafeVector(int, int)' > Sequence.h:392:52: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>] > SafeVector.h:28:3: note: candidate expects 1 argument, 2 provided > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int] > SafeVector.h:25:3: note: candidate expects 0 arguments, 2 provided > In file included from Main.cc:9:0: > MultiSequence.h: In member function 'char > MultiSequence::GetAnnotationChar(SafeVector<char>&)': > MultiSequence.h:348:35: error: no matching function for call to > 'SafeVector<int>::SafeVector(int, int)' > MultiSequence.h:348:35: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>] > SafeVector.h:28:3: note: candidate expects 1 argument, 2 provided > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int] > SafeVector.h:25:3: note: candidate expects 0 arguments, 2 provided > MultiSequence.h: In member function 'void > MultiSequence::WriteALN(std::ostream&, int)': > MultiSequence.h:495:67: error: no matching function for call to > 'SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, > std::allocator<char> > > >::SafeVector(int)' > MultiSequence.h:495:67: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, > std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = > SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, > std::allocator<char> > > >] > SafeVector.h:28:3: note: no known conversion for argument 1 from 'int' to > 'const SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, > std::allocator<char> > > >&' > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = > __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >] > SafeVector.h:25:3: note: candidate expects 0 arguments, 1 provided > MultiSequence.h:496:47: error: no matching function for call to > 'SafeVector<int>::SafeVector(int)' > MultiSequence.h:496:47: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>] > SafeVector.h:28:3: note: no known conversion for argument 1 from 'int' to > 'const SafeVector<int>&' > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int] > SafeVector.h:25:3: note: candidate expects 0 arguments, 1 provided > MultiSequence.h: In member function 'MultiSequence* > MultiSequence::Project(const std::set<int>&)': > MultiSequence.h:652:67: error: no matching function for call to > 'SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, > std::allocator<char> > > >::SafeVector(std::set<int>::size_type)' > MultiSequence.h:652:67: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, > std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = > SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, > std::allocator<char> > > >] > SafeVector.h:28:3: note: no known conversion for argument 1 from > 'std::set<int>::size_type' to 'const > SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, > std::allocator<char> > > >&' > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = > __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >] > SafeVector.h:25:3: note: candidate expects 0 arguments, 1 provided > MultiSequence.h:653:59: error: no matching function for call to > 'SafeVector<SafeVector<char>*>::SafeVector(std::set<int>::size_type)' > MultiSequence.h:653:59: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = SafeVector<char>*, SafeVector<TYPE> = > SafeVector<SafeVector<char>*>] > SafeVector.h:28:3: note: no known conversion for argument 1 from > 'std::set<int>::size_type' to 'const SafeVector<SafeVector<char>*>&' > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = > SafeVector<char>*] > SafeVector.h:25:3: note: candidate expects 0 arguments, 1 provided > In file included from Main.cc:10:0: > EvolutionaryTree.h: In static member function 'static TreeNode* > TreeNode::ComputeTree(const VVF&)': > EvolutionaryTree.h:107:40: error: no matching function for call to > 'SafeVector<float>::SafeVector(int&)' > EvolutionaryTree.h:107:40: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>] > SafeVector.h:28:3: note: no known conversion for argument 1 from 'int' to > 'const SafeVector<float>&' > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float] > SafeVector.h:25:3: note: candidate expects 0 arguments, 1 provided > EvolutionaryTree.h:108:48: error: no matching function for call to > 'SafeVector<TreeNode*>::SafeVector(int&, NULL)' > EvolutionaryTree.h:108:48: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = TreeNode*, SafeVector<TYPE> = > SafeVector<TreeNode*>] > SafeVector.h:28:3: note: candidate expects 1 argument, 2 provided > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = > TreeNode*] > SafeVector.h:25:3: note: candidate expects 0 arguments, 2 provided > EvolutionaryTree.h:109:38: error: no matching function for call to > 'SafeVector<int>::SafeVector(int&, int)' > EvolutionaryTree.h:109:38: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>] > SafeVector.h:28:3: note: candidate expects 1 argument, 2 provided > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int] > SafeVector.h:25:3: note: candidate expects 0 arguments, 2 provided > In file included from Main.cc:11:0: > SparseMatrix.h: In member function 'VF* SparseMatrix::GetPosterior() const': > SparseMatrix.h:236:62: error: no matching function for call to > 'SafeVector<float>::SafeVector(int)' > SparseMatrix.h:236:62: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>] > SafeVector.h:28:3: note: no known conversion for argument 1 from 'int' to > 'const SafeVector<float>&' > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float] > SafeVector.h:25:3: note: candidate expects 0 arguments, 1 provided > Main.cc: In function 'MultiSequence* DoAlign(MultiSequence*)': > Main.cc:255:41: error: no matching function for call to > 'SafeVector<float>::SafeVector(const int&, int)' > Main.cc:255:41: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>] > SafeVector.h:28:3: note: candidate expects 1 argument, 2 provided > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float] > SafeVector.h:25:3: note: candidate expects 0 arguments, 2 provided > Main.cc:260:15: error: no matching function for call to > 'SafeVector<SparseMatrix*>::SafeVector(const int&, NULL)' > Main.cc:260:15: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = SparseMatrix*, SafeVector<TYPE> = > SafeVector<SparseMatrix*>] > SafeVector.h:28:3: note: candidate expects 1 argument, 2 provided > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = > SparseMatrix*] > SafeVector.h:25:3: note: candidate expects 0 arguments, 2 provided > Main.cc: In function 'SafeVector<SafeVector<SparseMatrix*> > > DoRelaxation(MultiSequence*, SafeVector<SafeVector<SparseMatrix*> >&)': > Main.cc:986:16: error: no matching function for call to > 'SafeVector<SparseMatrix*>::SafeVector(const int&, NULL)' > Main.cc:986:16: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = SparseMatrix*, SafeVector<TYPE> = > SafeVector<SparseMatrix*>] > SafeVector.h:28:3: note: candidate expects 1 argument, 2 provided > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = > SparseMatrix*] > SafeVector.h:25:3: note: candidate expects 0 arguments, 2 provided > Main.cc: In function 'void WriteAnnotation(MultiSequence*, const > SafeVector<SafeVector<SparseMatrix*> >&)': > Main.cc:1329:42: error: no matching function for call to > 'SafeVector<int>::SafeVector(const int&, int)' > Main.cc:1329:42: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = int, SafeVector<TYPE> = SafeVector<int>] > SafeVector.h:28:3: note: candidate expects 1 argument, 2 provided > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = int] > SafeVector.h:25:3: note: candidate expects 0 arguments, 2 provided > Main.cc:1330:62: error: no matching function for call to > 'SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, > std::allocator<char> > > >::SafeVector(const int&)' > Main.cc:1330:62: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = __gnu_cxx::__normal_iterator<char*, > std::vector<char, std::allocator<char> > >, SafeVector<TYPE> = > SafeVector<__gnu_cxx::__normal_iterator<char*, std::vector<char, > std::allocator<char> > > >] > SafeVector.h:28:3: note: no known conversion for argument 1 from 'const > int' to 'const SafeVector<__gnu_cxx::__normal_iterator<char*, > std::vector<char, std::allocator<char> > > >&' > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = > __gnu_cxx::__normal_iterator<char*, std::vector<char, std::allocator<char> > > >] > SafeVector.h:25:3: note: candidate expects 0 arguments, 1 provided > In file included from PostProbs.cc:1:0: > SafeVector.h:26:22: error: expected ')' before 'size' > SafeVector.h:27:22: error: expected ')' before 'size' > PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, > float)': > PostProbs.cc:140:54: error: no matching function for call to > 'SafeVector<float>::SafeVector(int)' > PostProbs.cc:140:54: note: candidates are: > SafeVector.h:28:3: note: SafeVector<TYPE>::SafeVector(const > SafeVector<TYPE>&) [with TYPE = float, SafeVector<TYPE> = SafeVector<float>] > SafeVector.h:28:3: note: no known conversion for argument 1 from 'int' to > 'const SafeVector<float>&' > SafeVector.h:25:3: note: SafeVector<TYPE>::SafeVector() [with TYPE = float] > SafeVector.h:25:3: note: candidate expects 0 arguments, 1 provided > In file included from ReadMatrix.cc:6:0: > SafeVector.h:26:22: error: expected ')' before 'size' > SafeVector.h:27:22: error: expected ')' before 'size' > make[1]: *** [probalign] Error 1 The full build log is available from: http://people.debian.org/~lucas/logs/2011/05/02/probalign_1.4-1_lsid64.buildlog A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on about 50 AMD64 nodes of the Grid'5000 platform, using a clean chroot. Internet was not accessible from the build systems. -- | Lucas Nussbaum | [email protected] http://www.lucas-nussbaum.net/ | | jabber: [email protected] GPG: 1024D/023B3F4F | -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
