Your message dated Sun, 13 Nov 2011 10:02:15 +0000
with message-id <e1rpwtd-0005kz...@franck.debian.org>
and subject line Bug#643443: fixed in muscle 1:3.8.31-1
has caused the Debian Bug report #643443,
regarding muscle: FTBFS: domuscle.cpp:123:39: error: format not a string
literal and no format arguments [-Werror=format-security]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
643443: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=643443
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: muscle
Version: 3.70+fix1-2
Severity: serious
Tags: wheezy sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20110923 qa-ftbfs hardening-format-security hardening
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> g++ -c -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2
> -Wformat -Wformat-security -Werror=format-security -Wall domuscle.cpp -o
> domuscle.o
> domuscle.cpp: In function 'void DoMuscle()':
> domuscle.cpp:123:39: error: format not a string literal and no format
> arguments [-Werror=format-security]
> intmath.h: At global scope:
> intmath.h:59:15: warning: 'double ScoreToDouble(SCORE)' defined but not used
> [-Wunused-function]
> cc1plus: some warnings being treated as errors
>
> make[1]: *** [domuscle.o] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2011/09/23/muscle_3.70+fix1-2_lsid64.buildlog
This happened because since dpkg 1.16.0 [0], hardening flags are enabled
under various conditions.
[0] http://lists.debian.org/debian-devel-announce/2011/09/msg00001.html
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--- End Message ---
--- Begin Message ---
Source: muscle
Source-Version: 1:3.8.31-1
We believe that the bug you reported is fixed in the latest version of
muscle, which is due to be installed in the Debian FTP archive:
muscle_3.8.31-1.diff.gz
to main/m/muscle/muscle_3.8.31-1.diff.gz
muscle_3.8.31-1.dsc
to main/m/muscle/muscle_3.8.31-1.dsc
muscle_3.8.31-1_amd64.deb
to main/m/muscle/muscle_3.8.31-1_amd64.deb
muscle_3.8.31.orig.tar.gz
to main/m/muscle/muscle_3.8.31.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 643...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <ple...@debian.org> (supplier of updated muscle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 13 Nov 2011 18:38:06 +0900
Source: muscle
Binary: muscle
Architecture: source amd64
Version: 1:3.8.31-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Charles Plessy <ple...@debian.org>
Description:
muscle - Multiple alignment program of protein sequences
Closes: 643443
Changes:
muscle (1:3.8.31-1) unstable; urgency=low
.
[ Charles Plessy ]
* New upstream release (Closes: #643443).
* debian/control: Enhances: t-coffee.
* Changed the doc-base section according to the new policy.
* Updated my email address.
* Updated debian/watch to new version scheme and download location.
* Repack usptream archive and implemented a get-orig-source target
(debian/rules, debian/README.source, debian/copyright).
* Use Debhelper 8 (debian/control, debian/compat).
* Build directly from debian/rules targets.
* Corrected VCS URLs in debian/control.
* Conforms to Debian Policy 3.9.2 (debian/control, no changes needed).
.
[ David Paleino ]
* removed myself from Uploaders (debian/control).
Checksums-Sha1:
e6d5507dbcbaf0fee90f4ea85fd6f04edd1fcfe3 1969 muscle_3.8.31-1.dsc
687812ca641f9096f999ee6f9a161c7d6dc57196 223652 muscle_3.8.31.orig.tar.gz
e93b9f1bcdad027eaeea400859999bd58eec4247 24208 muscle_3.8.31-1.diff.gz
32e8590c432e99c29e6389f5c02438ebc863395b 168874 muscle_3.8.31-1_amd64.deb
Checksums-Sha256:
7141151aec34574ae5c7cd7798b5138bd449c6b112e4ff872b9d4bb85a44cbd3 1969
muscle_3.8.31-1.dsc
fc9b33635eb57d8f65d2a949bdd5c87e77574d8fac35b48b52e0eff4c0cefee4 223652
muscle_3.8.31.orig.tar.gz
b971aaab901bf407729780820fe4625c7ce293fecde574313d64383b5346eb15 24208
muscle_3.8.31-1.diff.gz
1da45c7a378fe9beaac54ac4f6ecac7c433ff416edee025e94874109b740037d 168874
muscle_3.8.31-1_amd64.deb
Files:
68313f94e6b8f0c4c920d1c542143e45 1969 science optional muscle_3.8.31-1.dsc
079210d10218cbd2d32f691bfeedd51b 223652 science optional
muscle_3.8.31.orig.tar.gz
12319789e67271ca395c801fac459b57 24208 science optional muscle_3.8.31-1.diff.gz
cf76f729a8a287fef1890cf7b9343c9b 168874 science optional
muscle_3.8.31-1_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.10 (GNU/Linux)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=d1Xa
-----END PGP SIGNATURE-----
--- End Message ---
