Your message dated Tue, 20 Mar 2012 13:19:41 +0000
with message-id <[email protected]>
and subject line Bug#663889: fixed in qiime 1.3.0-3
has caused the Debian Bug report #663889,
regarding qiime: FTBFS: FlowgramAli_4frame.lhs:10:10: Could not find module
`System'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
663889: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=663889
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: qiime
Version: 1.3.0-2
Severity: serious
Justification: fails to build from source
qiime FTBFS:
| ghc --make -O2 FlowgramAli_4frame
|
| FlowgramAli_4frame.lhs:10:10:
| Could not find module `System'
| It is a member of the hidden package `haskell98-2.0.0.1'.
| Use -v to see a list of the files searched for.
| make[1]: *** [FlowgramAli_4frame] Error 1
| make[1]: Leaving directory
`/build/qiime-OSdDTF/qiime-1.3.0/qiime/support_files/denoiser/FlowgramAlignment'
| make[1]: Entering directory
`/build/qiime-OSdDTF/qiime-1.3.0/qiime/support_files/denoiser/FlowgramAlignment'
| cp FlowgramAli_4frame ../bin/
| cp: cannot stat `FlowgramAli_4frame': No such file or directory
| make[1]: *** [install] Error 1
| make[1]: Leaving directory
`/build/qiime-OSdDTF/qiime-1.3.0/qiime/support_files/denoiser/FlowgramAlignment'
Despite the error the build continued, finally failing with:
| running install_data
| creating /build/qiime-OSdDTF/qiime-1.3.0/debian/tmp/usr/qiime
| creating /build/qiime-OSdDTF/qiime-1.3.0/debian/tmp/usr/qiime/support_files
| creating
/build/qiime-OSdDTF/qiime-1.3.0/debian/tmp/usr/qiime/support_files/denoiser
| creating
/build/qiime-OSdDTF/qiime-1.3.0/debian/tmp/usr/qiime/support_files/denoiser/bin
| error: can't copy 'qiime/support_files/denoiser/bin/FlowgramAli_4frame':
doesn't exist or not a regular file
| dh_auto_install: python2.6 setup.py install --force
--root=/build/qiime-OSdDTF/qiime-1.3.0/debian/tmp --no-compile -O0
--install-layout=deb returned exit code 1
| make: *** [binary] Error 1
--
Jakub Wilk
--- End Message ---
--- Begin Message ---
Source: qiime
Source-Version: 1.3.0-3
We believe that the bug you reported is fixed in the latest version of
qiime, which is due to be installed in the Debian FTP archive:
qiime-doc_1.3.0-3_all.deb
to main/q/qiime/qiime-doc_1.3.0-3_all.deb
qiime_1.3.0-3.debian.tar.gz
to main/q/qiime/qiime_1.3.0-3.debian.tar.gz
qiime_1.3.0-3.dsc
to main/q/qiime/qiime_1.3.0-3.dsc
qiime_1.3.0-3_amd64.deb
to main/q/qiime/qiime_1.3.0-3_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated qiime package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 17 Mar 2012 19:19:38 +0100
Source: qiime
Binary: qiime qiime-doc
Architecture: source amd64 all
Version: 1.3.0-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
qiime - Quantitative Insights Into Microbial Ecology
qiime-doc - Quantitative Insights Into Microbial Ecology (tutorial)
Closes: 663889
Changes:
qiime (1.3.0-3) unstable; urgency=low
.
[ Charles Plessy ]
* renamed debian/upstream-metadata.yaml to debian/upstream
.
[ Andreas Tille ]
* Standards-Version: 3.9.3 (no changes needed)
* debian/patches/ghc_7.4.2_compatibility.patch: Fix build problem based
on illegal use of 'import System' (Thanks to Joachim Breitner
<[email protected]>) for the patch
Closes: #663889
Checksums-Sha1:
38ded419ea3f990b11cb30dbfed8c34a1bdbabd4 1520 qiime_1.3.0-3.dsc
3822d2837662a29044bfc99ab6ae399fc6aaccf4 10995 qiime_1.3.0-3.debian.tar.gz
1124cc8a88ae2c78298f52d3d8c36c2d4b1897c8 508580 qiime_1.3.0-3_amd64.deb
d59707765820938f559ff9c2f3608343d20ecfb6 4970184 qiime-doc_1.3.0-3_all.deb
Checksums-Sha256:
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qiime_1.3.0-3.dsc
19341b648c309b760d89d2be2c5ac2480c034fdb1ae5fcff54e71788cd33c477 10995
qiime_1.3.0-3.debian.tar.gz
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qiime_1.3.0-3_amd64.deb
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qiime-doc_1.3.0-3_all.deb
Files:
76e4529444d171020ecd5379737d2e61 1520 science extra qiime_1.3.0-3.dsc
da7b44ff6e1447312e22a2cc09b6735c 10995 science extra
qiime_1.3.0-3.debian.tar.gz
a4e379d4f7ce5a23838f9e2e250a2dc7 508580 science extra qiime_1.3.0-3_amd64.deb
272bd1fdf8ba827ec9f3fe9039258a4a 4970184 doc extra qiime-doc_1.3.0-3_all.deb
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--- End Message ---
