Your message dated Sun, 19 May 2013 13:17:48 +0000 with message-id <e1ue3ui-0001ar...@franck.debian.org> and subject line Bug#708454: fixed in biomaj 1.2.1-2 has caused the Debian Bug report #708454, regarding biomaj: FTBFS: [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:991: cannot find symbol to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 708454: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=708454 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: biomaj Version: 1.2.1-1 Severity: serious Tags: jessie sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20130514 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part: > make[1]: Entering directory `/«PKGBUILDDIR»' > echo > > ant -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 -f > usr/share/biomaj/build.xml > Buildfile: /«PKGBUILDDIR»/usr/share/biomaj/build.xml > > test_env: > > compile: > [mkdir] Created dir: /«PKGBUILDDIR»/usr/share/biomaj/build/classes > [mkdir] Created dir: /«PKGBUILDDIR»/usr/share/biomaj/dist > [javac] /«PKGBUILDDIR»/usr/share/biomaj/build.xml:110: warning: > 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set > to false for repeatable builds > [javac] Compiling 137 source files to > /«PKGBUILDDIR»/usr/share/biomaj/build/classes > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:717: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.DEFAULT_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:718: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LINE_GAP_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:719: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.DEFAULT_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:720: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LINE_GAP_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:721: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.DEFAULT_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:722: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LINE_GAP_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:735: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:737: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:739: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:741: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:743: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:745: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:749: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.DEFAULT_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:750: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LINE_GAP_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:751: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.DEFAULT_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:752: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LINE_GAP_ROWSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:753: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.DEFAULT_ROWSPEC > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:915: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:917: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:918: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.DEFAULT_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:919: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:979: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:981: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:983: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:985: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:987: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:989: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] > /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/exe/options/BioMAJLogger.java:991: > cannot find symbol > [javac] symbol : variable FormFactory > [javac] location: class org.inria.biomaj.exe.options.BioMAJLogger > [javac] > FormFactory.LABEL_COMPONENT_GAP_COLSPEC, > [javac] > ^ > [javac] Note: Some input files use or override a deprecated API. > [javac] Note: Recompile with -Xlint:deprecation for details. > [javac] Note: Some input files use unchecked or unsafe operations. > [javac] Note: Recompile with -Xlint:unchecked for details. > [javac] 28 errors > > BUILD FAILED > /«PKGBUILDDIR»/usr/share/biomaj/build.xml:110: Compile failed; see the > compiler error output for details. > > Total time: 11 seconds > make[1]: *** [override_dh_auto_build] Error 1 The full build log is available from: http://people.debian.org/~nhandler/logs/2013/05/14/biomaj_1.2.1-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: biomaj Source-Version: 1.2.1-2 We believe that the bug you reported is fixed in the latest version of biomaj, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 708...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Olivier Sallou <osal...@debian.org> (supplier of updated biomaj package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 19 May 2013 13:21:55 +0200 Source: biomaj Binary: biomaj biomaj-properties Architecture: source all Version: 1.2.1-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Olivier Sallou <osal...@debian.org> Description: biomaj - biological data-bank updater biomaj-properties - biological data-bank updater - example properties files Closes: 708454 Changes: biomaj (1.2.1-2) unstable; urgency=low . * Add patch to match libjgoodies-form-java >1.3, FormFactory replaced by FormSpecs (Closes: #708454) d/control: Depends on libjgoodies-form-java > 1.3 Checksums-Sha1: fc21aa850851e609a1b437345bfeb709eb722883 2496 biomaj_1.2.1-2.dsc d5f726109a50914cc9a8cf09723b6d6e935a77c7 26439 biomaj_1.2.1-2.debian.tar.gz 21ac3b6325e778bbde14989a48726a18ae06253c 3771682 biomaj_1.2.1-2_all.deb febfc961862ea90fb3d2ad0e614a61d18ac61a4a 35138 biomaj-properties_1.2.1-2_all.deb Checksums-Sha256: 8c988999fdd3e321952adcb962eaf41338125a4cb745ca9643b8c165d00da582 2496 biomaj_1.2.1-2.dsc 19164904738742e7b65a974266dbacd79f4d488b7e1126759be0d9469dec6ae2 26439 biomaj_1.2.1-2.debian.tar.gz 5679792d82a94fc16256c357143a50b8d3e403b304deb4a2a8f47c2bfb3dde63 3771682 biomaj_1.2.1-2_all.deb 078f621c0b38d8be01954c934590a5ae182d98d6a8bb51a443ef0707fbe8800d 35138 biomaj-properties_1.2.1-2_all.deb Files: a01c6389a9076c697891fd2acf7a9d6d 2496 science optional biomaj_1.2.1-2.dsc aa692f15828967522d811aff106effa5 26439 science optional biomaj_1.2.1-2.debian.tar.gz 7cda13b76d151c8d62251c67a1be86c1 3771682 science optional biomaj_1.2.1-2_all.deb 2ec33d38f91d159d45306f6d6638fab3 35138 science optional biomaj-properties_1.2.1-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iQIcBAEBCAAGBQJRmLqoAAoJEHjcaNsybYQ4cxEP/3a5wpD9frVxZE6YeQ3tnlJH KeP7RMTl/HF2zvz4UhEdzDrFUIciOUhgSwjZBwAXgu1yDiTsqKBGd1NujF1MpMD+ 3Vb8dGVom9Iaagfmy2wpMBDmJcXq39EfOArd1IfKR/2LfaJuZntA8C8YQCBDwLRl X/2GjSL2ptM8gjJDkRlTAtXqvJwVKaOSwwlZ+V2Nl6yiKKzASm5LQLztC+UZ6iFY OGdNuCWg3Xod/3H0bmzra+DtY0xlTC6bS5V/xEJeh4Nc0KDJxN7B1pOBwnI674vY lwv2lBRfOfN1AakTndmO2mUOqRoNR2rVZn1fOg/yIDbtEt2DxI29WVMDG08ev1lp cXN14ZBc16bHbtHUuCtG/HJI+4luWC8TN834Ex9moEH3XrggHGNPxb9Rqxymhxl8 li8Ii6PXvBJhopbMbzdZBwFrm6gVNP+UATrfrqXe+HVBEMvjoe7juVLo0yfVqhup ol/UqhJ6ybZZA1unxUI5XLgzgGu14L895M2t0xCIu9yGqZMTbR+5zQsFv4jtOC+y ROGVXBgI2f8tL4YpSV6bInDitlFnpUsG00gRmQLkadE+DgilkdyKKNRDgYQim3se Aoj4UFEZmB4rImle5wOxLJ0FCbs9aKf0i054NZuxAy3Iz+JKDEJ6OrDH1IZSH7gM 33AfBaCG6W8BM4MnHYvd =XJSy -----END PGP SIGNATURE-----
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