Your message dated Mon, 03 Jun 2013 04:19:07 +0000
with message-id <[email protected]>
and subject line Bug#710807: fixed in ncbi-blast+ 2.2.28-2
has caused the Debian Bug report #710807,
regarding ncbi-blast+: FTBFS on mipsel: project_tree_builder does not work
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
710807: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=710807
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ncbi-blast+
Version: 2.2.28-1
Severity: serious
Justification: fails to build from source
The mipsel build of ncbi-blast+ is failing because project_tree_builder
(an internal tool used to streamline the build) segfaults:
/.../ncbi-blast+-2.2.28/c++/scripts/common/impl/create_flat_makefile.sh: line
201: 15504 Segmentation fault $ptb -version > /dev/null 2>&1
ERROR: ./build-system/project_tree_builder/project_tree_builder does not work
I am investigating this failure on eder, and will follow up as I learn more.
--- End Message ---
--- Begin Message ---
Source: ncbi-blast+
Source-Version: 2.2.28-2
We believe that the bug you reported is fixed in the latest version of
ncbi-blast+, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <[email protected]> (supplier of updated ncbi-blast+ package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 02 Jun 2013 23:00:44 -0400
Source: ncbi-blast+
Binary: ncbi-blast+ ncbi-blast+-legacy
Architecture: source amd64 all
Version: 2.2.28-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Aaron M. Ucko <[email protected]>
Description:
ncbi-blast+ - next generation suite of BLAST sequence search tools
ncbi-blast+-legacy - NCBI Blast legacy call script
Closes: 710807
Changes:
ncbi-blast+ (2.2.28-2) unstable; urgency=low
.
* debian/patches/use_pie_for_apps: Explicitly build all executables with
-fPIE -pie, to avoid giving project_tree_builder a partial PIE
treatment that now fails on mips and mipsel. (Closes: #710807.)
* debian/rules: Retire redundant APP_LDFLAGS override.
* Standards-Version: 3.9.4. (Already compliant.)
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